@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TYL5: (2017-12-15 )
MLLLLFLNHHSIAKTNLFVNVFHTVCLPFLKMIRLADFLAVIPASLLY
Atome Classification :
(18 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-------.-----------.------...---..20----........-----.30----........40.......-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
L
L
L
F
LNHHSI-------A-----------K------
T
N
L
---
F
V
N
-----
V
F
H
T
V
C
L
P
-----
F
L
K
----
M
I
R
L
A
D
F
L
A
V
I
P
A
S
LLY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
69.25
27%
-155
- C3 -
-
2KAF
-
R1A_CVHSA
A:
[1-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
E
E
H
F
V
E
T
V
S
L
-------
A
GSYRD
W
S
Y
S
GQ
R
------
T
E
L
GVE
F
L
K
RGD
K
I
V
Y
H
T
L
E
S
P
-----
V
E
F
----
H
L
D
G
E
V
L
S
L
D
K
L
K
S
L
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
61.72
30%
-215
- C3 -
-
1TU3
-
RABE1_HUMAN
F:
[21-66]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
R
L
Q
T
E
L
D
V
S
E
-------
Q
-----------
V
------
Q
R
D
---
F
V
K
-----
L
S
Q
T
L
Q
V
Q
------
L
E
----
R
I
R
Q
A
D
S
L
E
R
I
R
A
I
L
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
60.97
22%
-240
- C3 -
-
4QIQ
-
XYLE_ECOLI
A:
[7-470]
-------------------------------------------------------------------------------------------------------------------S
Y
I
F
S
I
T
L
V
A
T
L
G
G
L
L
F
G
Y
D
T
A
VISGT
V
E
S
L
N
T
V
FVAPQNLS
E
S
A
A
N
S
L
L
G
F
C
V
A
S
A
L
I
G
C
I
I
G
G
A
L
G
G
Y
C
S
N
RFG
R
R
D
S
L
K
I
A
A
V
L
F
F
I
S
G
V
G
S
A
WPELGFTSINPDNTVPVYLAGY
V
P
E
F
V
I
Y
R
I
I
G
G
I
G
V
G
L
A
S
M
L
S
P
M
Y
I
A
E
LAPAHI
R
G
K
L
V
S
F
N
Q
F
A
I
I
F
G
Q
L
L
V
Y
C
V
N
Y
F
I
A
R
SGD
A
S
W
L
-----------
N
------
T
D
G
---
W
R
Y
-----
M
F
A
S
E
C
I
P
-----
A
L
L
----
F
L
M
L
L
Y
T
V
P
E
S
P
R
W
L
M
T
L
A
T
Q
A
V
Q
E
I
K
H
S
L
DRL
L
M
F
G
V
G
V
I
V
I
G
V
M
L
S
I
F
Q
Q
F
V
G
I
N
V
V
L
Y
Y
A
P
E
V
F
K
T
L
GAS
T
D
I
A
L
L
Q
T
I
I
V
G
V
I
N
L
T
F
T
V
L
A
I
M
T
V
DKFGRKP
L
Q
I
I
G
A
L
G
M
A
I
G
M
F
S
L
G
T
A
F
Y
T
QAP
G
I
V
A
L
L
S
M
L
F
Y
V
A
A
F
A
M
SWGP
V
C
W
V
L
L
S
E
I
F
PNA
I
R
G
K
A
L
A
I
A
V
A
A
Q
W
L
A
N
Y
F
V
S
W
T
FPMMDKN
S
W
L
V
A
H
FHNGF
S
Y
W
I
Y
G
C
M
G
V
L
A
A
L
F
M
W
KFVPETKGKTL
7
HHSearch
59.50
17%
-250
- C4 -
-
4Q24
1
CLPS_STRNR
A:
[185-213]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
A
D
S
P
G
V
-------
F
-----------
S
------
V
P
S
---
S
V
L
-----
C
Y
H
I
-
D
T
P
-----
I
T
A
----
F
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
56.95
17%
-289
* C4 *
-
3OQV
1
CLPS_STRNR
A:
[185-214]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
A
D
S
P
G
V
-------
F
-----------
S
------
V
P
S
---
S
V
L
-----
C
Y
H
I
-
D
T
P
-----
I
T
A
----
F
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
48.42
24%
-236
- C3 -
-
4O89
-
RTCA_PYRHO
A:
[126-146]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
---
P
V
D
-----
Y
L
S
N
V
T
L
F
-----
A
L
E
----
K
I
G
I
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
47.71
14%
-89
- C3 -
-
2EWT
-
?
A:
[1-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
S
E
Y
A
K
Q
L
G
A
K
L
R
A
I
R
T
Q
Q
GLS
L
H
G
V
E
E
K
S
Q
G
R
W
-------
K
-----------
A
------
V
V
V
---
G
S
Y
-----
E
R
G
D
R
A
V
T
-----
V
Q
R
----
L
A
E
L
A
D
F
Y
G
V
P
V
Q
E
L
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
46.04
32%
0
- C- -
-
5TSJ
-
VATD_THET8
K:
[151-172]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
I
-------
K
-----------
K
------
T
T
R
---
R
V
N
-----
A
L
E
Q
V
V
I
P
-----
G
I
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
43.53
32%
-229
- C3 -
-
3W3A
-
VATD_THET8
G:
[151-172]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
I
-------
K
-----------
K
------
T
T
R
---
R
V
N
-----
A
L
E
Q
V
V
I
P
-----
G
I
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
43.08
20%
-159
* C3 *
-
2Q06
-
?
A:
[22-496]
A
T
E
I
R
A
S
V
G
R
M
V
G
G
I
G
R
F
Y
I
Q
M
C
T
E
L
KLS
D
Q
E
G
R
L
I
Q
N
S
I
T
I
E
R
M
V
L
S
A
F
DERRNRYKDPK
K
T
G
G
PIYRRRD
G
K
W
V
R
E
L
I
L
Y
D
K
E
E
I
R
R
I
W
R
Q
A
N
NGEDAT
A
G
L
T
H
M
M
I
W
H
S
N
L
N
D
A
T
YQR
T
R
A
L
V
R
T
GMDPRMCSLMQGSTLPRRSG
A
A
G
A
A
I
KG
V
G
T
M
V
M
E
L
I
R
M
I
K
R
G
I
NDRNFWRGENG
R
R
T
R
I
A
Y
E
R
M
C
N
I
L
K
G
K
FQT
A
A
Q
K
A
M
M
D
Q
V
R
E
SRNPG
N
A
E
I
E
D
L
I
F
L
A
R
S
A
L
I
LRGS
I
A
H
K
S
C
L
P
A
C
V
Y
G
L
A
V
A
S
GYDFERE
G
Y
S
LVGI
D
P
F
R
L
L
Q
N
S
Q
V
F
S
L
I
R
P
N
E
N
P
A
-------
H
-----------
K
------
S
Q
L
---
V
W
M
-----
A
C
H
S
A
A
F
E
-----
D
L
R
----
V
S
S
F
I
R
G
T
R
V
I
P
R
G
Q
L
S
TRGVQIASNENVEA
M
D
S
S
T
L
ELRSR
Y
W
A
I
R
T
RSG
G
N
T
N
Q
Q
RA
S
A
G
Q
I
S
VQPTFS
V
Q
R
N
L
P
F
E
R
A
T
I
M
A
A
F
KGNTEGRT
S
D
M
R
T
E
I
I
R
M
M
E
S
ARPEDVSFQG
R
G
V
F
E
LSDEKAT
N
P
I
V
P
S
F
DMSNEGSYFFGDNAEEY--------------------------------------------------------------------------------
18
Fugue
42.24
12%
-136
- C3 -
-
2DZN
-
PRS6B_YEAST
B:
[360-416]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
A
P
E
A
D
L
D
S
L
-------
I
-----------
I
RNDSLS
G
A
V
---
I
A
A
-----
I
M
Q
E
A
G
L
R
-----
A
V
R
K
NRY
V
I
L
Q
S
D
L
E
E
A
Y
A
T
Q
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
40.13
5%
-330
- C3 -
-
3PQV
1
?
B:
[127-146]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
---
G
I
D
-----
A
I
K
W
G
L
M
P
-----
I
M
E
----
K
F
G
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
39.78
5%
-
- C3 -
-
4CLQ
-
RCL1_YEAST
A:
[127-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
---
G
I
E
-----
A
I
K
W
G
L
M
P
-----
V
M
E
----
K
F
G
V
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
39.78
32%
-123
- C3 -
-
5IFG
-
HIGA_ECOLI
D:
[4-35]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
A
-----------
D
------
I
L
Q
---
A
G
E
-----
K
L
T
A
V
-
A
P
-----
F
L
A
----
G
I
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
35.14
21%
-69
- C1 -
-
5T59
-
?
C:
[5-36]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
G
V
-------
K
-----------
S
------
R
K
T
---
G
L
T
-----
V
N
K
T
V
Q
K
D
-----
E
Y
S
----
M
E
N
L
N
D
F
F
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
33.44
44%
-94
- C3 -
-
4HGQ
-
?
C:
[148-163]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
-----
K
V
L
----
G
I
N
L
E
D
F
I
A
V
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
31.94
14%
-110
- C3 -
-
2BX9
-
RTPA_BACSU
A:
[1-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
I
A
T
D
D
L
E
V
A
C
-------
P
-----------
K
------
C
E
R
---
A
G
E
-----
I
E
G
T
P
C
P
A
CSGKG
V
I
L
----
T
A
Q
G
Y
T
L
L
D
F
I
Q
K
H
L
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
26.76
24%
-117
- C2 -
-
1BE3
-
?
I:
[46-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
S
V
L
C
R
E
S
L
-------
R
-----------
G
------
Q
A
A
---
G
R
P
-----
L
V
A
S
V
S
L
N
----------------------
V
P
A
S
V
R
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------