@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TYQ5: (2017-12-15 )
MFRRYPYSDSSNSEEKRRKNMKYFQLVLTLITAMVIEVLEQKLA
Atome Classification :
(19 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....------...20-...-----......30........40...---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFRRYPYSDSSNSEEK------RRKN--MKY-----FQLVLTLITAMVIEVLEQKLA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
70.28
23%
3
- C6 -
-
5K6L
9
?
A:
[5-798]
KVILD
W
N
E
Y
I
E
A
A
R
S
V
V
S
E
G
CVLLENNGTLPLEKG
A
V
V
S
I
F
G
RIQTHYYK
S
G
T
G
SGG
M
V
N
V
T
H
V
V
G
V
P
E
G
L
K
L
S
EHVTVN
E
E
L
E
N
I
Y
K
E
W
E
E
E
N
PFDEGLGWGTEPWSQPEMELT
D
E
I
V
S
N
A
S
A
K
S
D
V
A
I
V
I
I
G
R
T
A
G
E
D
K
D
F
S
DVAGAYKLS
E
T
E
E
D
M
L
R
R
V
R
K
H
F
D
K
M
V
V
L
L
NVGSLMDL
N
V
I
S
E
I
NPD
A
L
M
V
IWQGGMI
G
G
L
G
T
A
D
V
L
T
GKVN
P
S
G
K
L
T
D
T
I
A
YEINDYPSTENFGDPVRDYYAEDIYV
G
Y
R
Y
F
E
T
FEKSKVRYPFG
Y
G
I
S
Y
T
E
F
E
H
T
V
G
E
F
T
A
D
INSR
T
F
T
A
S
C
T
V
K
NTGS
V
A
G
K
D
V
A
Q
F
Y
V
S
A
PQGKLGKPE
K
V
L
V
A
F
K
K
T
G
ILNPG
K
E
E
K
I
T
V
T
V
P
FDR
F
A
S
F
D
DTGVTGAESCFVLEA
G
E
Y
T
V
Y
E
GKNVRESYKE
G
S
F
T
L
E
E
N
I
V
T
E
K
L
S
KALAPM
E
S
F
K
R
M
K
A
S
E
N
SDG
T
L
S
V
K
Y
E
D
V
P
V
S
D
V
-
D
E
K
K
R
------
R
L
D
N
--
M
P
V
E
I
PQD
F
T
A
R
Y
S
L
K
D
V
L
S
G
S
V
D
M
E
K
F
I
ARLS
D
D
D
L
A
C
I
V
R
G
E
G
MGSSLVTAGTAAAFGGVS
E
Y
L
R
K
M
DIPA
V
C
C
D
D
G
PSGMRLDSGAT
A
F
S
M
P
N
G
T
M
L
A
S
T
FN
P
D
V
I
E
R
M
Y
G
F
T
S
L
E
M
I
Y
N
KVECLLGPGMNIHRNPLNGRNFEYFSED
P
Y
L
N
G
T
I
A
S
A
M
L
K
G
L
H
K
YG
S
D
G
V
A
K
HFCCNNQELGRQ
A
C
D
S
V
V
S
Q
R
A
L
R
E
IYL
K
G
F
E
I
A
V
K
EGGCK
A
F
M
T
T
YAQVNGMWTAGNYDLNTRILRDEWGFK
G
I
V
M
T
DWW
A
Q
V
N
D
RG
G
E
P
T
KNN
T
A
A
M
V
R
A
QNDLYMVTANAAMNSANDN
T
L
S
Q
L
S
E
GKLN
R
A
E
L
Q
R
C
A
M
N
I
C
E
Y
A
M
N
T
M
A
M
K
R
L
C
RN
D
I
K
V
E
I
A
GR
7
HHSearch
60.49
24%
0
- C- -
-
1MNN
2
NDT80_YEAST
A:
[253-288]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
V
Q
F
A
S
S
I
S
V
-
K
K
------
P
S
Q
Q
--
N
K
H
-----
F
S
L
H
V
I
L
G
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
60.25
18%
-6
- C6 -
-
4D10
-
CSN5_HUMAN
E:
[24-333]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIDEIYKYD
K
K
Q
Q
Q
E
I
L
A
A
KPWTKDHHYFK
Y
C
K
I
S
A
L
A
L
L
K
M
V
M
H
A
R
S
G
GN
L
E
V
M
G
L
M
L
G
K
V
D
GE
T
M
I
I
M
D
S
F
A
L
PVEGTETRVNAQAAA
Y
E
Y
M
A
A
Y
I
E
N
A
K
Q
V
GRLENAI
G
W
Y
H
S
HPGY
G
C
W
L
S
G
I
D
V
S
T
Q
M
L
N
Q
Q
FQEP
F
V
A
V
V
I
D
P
T
R
T
I
S
A
G
K
V
N
L
G
A
F
R
T
Y
P
K
G
Y
K
P
P
D
E
G
P
SE
Y
Q
T
I
P
L
N
K
--
I
E
D
-----
F
G
V
H
C
K
Q
Y
Y
A
L
E
V
S
Y
F
K
S
S
L
D
R
K
L
L
E
L
L
W
N
KY
W
V
N
T
L
S
SSSLLTN
A
D
Y
T
T
G
Q
V
F
D
L
S
E
K
L
E
Q
S
E
A
Q
L
GRGSED
K
L
A
K
A
T
R
D
S
C
K
T
T
I
E
A
I
H
G
L
M
S
Q
V
I
K
D
K
L
FNQINI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
59.61
25%
-34
* C7 *
-
1M6U
-
NDT80_YEAST
A:
[195-224]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
V
Q
F
A
S
S
I
S
V
--
K
-------
K
P
F
QQ
N
K
H
-----
F
S
L
H
V
I
L
G
A
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
59.37
44%
-313
- C7 -
-
5KKO
-
?
C:
[3-18]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
M
K
Y
-----
F
Q
I
D
E
L
T
L
N
A
M
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
57.74
27%
204
- C4 -
-
3UL0
-
NCBP1_MOUSE
C:
[3-25]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
R
R
R
H
S
D
E
N
D
G
G
Q
P
H
K
------
R
R
K
T
--
S
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
57.63
44%
-302
- C7 -
-
5KKO
-
?
E:
[3-18]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
M
K
Y
-----
F
Q
I
D
E
L
T
L
N
A
M
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
56.52
25%
142
- C3 -
-
2MXM
-
HPR3_THRPR
A:
[1-33]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DCLKF
G
W
K
C
N
P
R
N
D
K
C
C
S
G
L
K
------
C
G
S
N
--
H
N
W
-----
C
K
L
H
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
53.65
20%
-80
- C6 -
-
1SPF
-
PSPC_PIG
A:
[1-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
I
P
C
C
P
------
V
------
N
L
K
R
--
L
L
V
-----
V
V
V
V
V
V
L
V
V
V
V
I
V
G
A
L
L
M
G
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
53.65
20%
-80
* C6 *
-
1SPF
-
?
?:
[1-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
I
P
C
C
P
------
V
------
N
L
K
R
--
L
L
V
-----
V
V
V
V
V
V
L
V
V
V
V
I
V
G
A
L
L
M
G
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
53.19
23%
-247
- C6 -
-
2P06
-
Y060_ARCFU
A:
[22-45]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
Y
-----
F
R
L
A
E
K
F
L
R
E
M
H
A
K
Y
M
K
R
V
S
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
51.63
12%
70
- C6 -
-
3CMN
-
?
A:
[43-395]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LID
W
E
Q
A
R
Q
A
A
L
R
L
S
QWEQAPVDN
R
A
F
R
R
E
Q
Y
A
R
M
V
A
L
S
E
P
L
I
A
D
Y
L
GVRLPEPVS
R
I
F
V
F
D
R
R
E
W
L
E
A
N
I
V
S
F
S
Q
L
F
R
P
I
E
E
M
Y
E
KS
S
K
L
L
G
V
Q
I
G
G
L
L
G
Y
L
A
Q
R
VLGQYDLSLLSAGG
S
L
Y
F
V
E
P
N
I
A
R
V
Q
Q
Q
L
GLS
D
E
D
F
R
L
W
I
T
L
H
E
M
T
H
A
F
E
F
EAYPW
V
R
T
Y
F
R
E
L
L
E
Q
N
F
A
L
T
-----
P
E
------
Q
R
A
V
--
F
D
R
-----
I
Q
A
L
M
S
L
I
E
G
Y
G
N
H
V
M
N
A
V
G
R
RLLPS
F
N
Q
I
E
Q
Q
I
A
Q
R
Q
R
Q
R
T
M
L
D
Q
M
V
F
R
L
T
GLD
L
K
L
A
Q
Y
QQ
G
E
A
F
V
N
A
V
V
A
A
RG
I
Q
F
A
S
RVWERPENLPS
M
D
E
I
R
N
P
G
Q
W
I
V
R
M
D
R
EG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
50.92
23%
-239
- C6 -
-
2P06
1
Y060_ARCFU
B:
[17-45]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
------
Y
F
Q
G
--
M
D
Y
-----
F
R
L
A
E
K
F
L
R
E
M
H
A
K
Y
M
K
R
V
S
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
48.80
19%
176
- C5 -
-
5BRM
-
STK3_HUMAN
G:
[7-28]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
K
R
N
A
T
S
P
Q
V
Q
------
R
P
S
F
--
M
D
Y
-----
F
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
42.55
33%
254
- C7 -
-
5H5P
-
?
A:
[148-165]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
------
P
N
P
D
--
Q
R
Y
-----
F
M
L
V
V
A
L
Q
A
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
42.13
21%
71
- C6 -
-
1V5K
-
MARE1_MOUSE
A:
[58-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
L
E
H
E
------
Y
I
Q
N
--
F
K
I
-----
L
Q
A
G
F
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
36.10
21%
-
- C6 -
-
2QJZ
-
MARE1_HUMAN
A:
[65-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
L
E
H
E
------
Y
I
Q
N
--
F
K
I
-----
L
Q
A
G
F
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
32.41
19%
-122
- C2 -
-
2M8V
-
?
A:
[1-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
R
G
W
I
K
L
K
D
C
P
N
--------------------------
V
I
S
S
I
C
A
G
T
I
I
T
A
C
K
N
C
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
30.43
18%
55
- C1 -
-
4UQX
-
?
A:
[207-217]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
A
R
Y
A
E
T
V
E
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------