@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TYS5: (2017-12-15 )
MNKMSEKYQVTKKDLRKANYRWLMSVCTFNYQTQQGASVTYALSPILRKLYKDDDEYIEALNNHFQYYNTQPWLAAIILGACVAMEEKQGLEAKDAINDFKVGTMGPIAGIGDSLLMTMIPTIMGSIAAYMALENNPVGIFLWFILIMVIFFFRMRGFEFGYKQGMKIVTEYGEKINYLTEAASVLGLTVVGSLIASVISVSTPLKFTFGEVSMKIQPMLDKILPTLIPVIITAAAYYLLSKKKISMTILILLVIVFAMVMAAFGILA
Atome Classification :
(20 SA)
---------.........10........20......-..30....---...-.40--..-.----.....50-....----.-..-.---.60-----------.........------70.------.-------------....-------------..80.-------.--------------......90...--.....100....-...------110....--------------------...120...---.--------....130..-----.....140-....-..-..150.....--..160.......170....-.-..180-........190------.--....--------....200-----.--........210-----------.----..------......220.-----.....-.---230.--....----..240....------...250--------.---....------------..-260......---------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------MNK
M
S
E
K
Y
Q
V
T
K
K
D
L
R
K
A
N
Y
R
W
L
M
S
V
C-TFNYQTQQ---GAS-
V
T
Y
--
A
L
-
S
----
P
I
L
R
K
L
--YKD
D
----
D
-
E
Y
-
I
---
E
A
------------
L
N
N
H
F
QYYN------T
Q
P
------
W
-------------
L
A
A
I
-------------
I
L
G
A
C
-------
V
--------------
A
M
E
E
KQGLE
A
K
--DAINDFKVGTMG-PIA------GI
G
D
S
L
L
--------------------
M
T
M
I
-
P
T
I
M
---
G
--------
S
I
A
A
Y
M
ALE-----NNP
V
G
I
F
--
L
W
F
I
-
L
I
-
M
V
I
F
F
F
R
MRG--FE
F
G
Y
K
Q
G
M
K
I
V
T
E
Y
G
E
K
I
-
N
-
Y
L
T
E
--
A
A
S
V
L
G
L
T
V
--------
V
--
G
S
L
I
--------
A
S
V
I
S-------V--STP
L
K
F
T
FG-------------
E
----
V
S
------
M
K
I
Q
P
M
L
D
K
I
-----
L
P
T
L
I
-
P
---
V
I
I
T
--
A
A
A
Y
----
Y
L
L
SKK
K
I
S
------
M
T
I
L
I
L
--------
L
---
V
I
V
F
------------
A
M
-
V
M
A
A
F
GILA---------------------------
21
Fugue
74.26
20%
-
- C1 -
-
4JP0
-
?
A:
[2-381]
LDTN
K
V
Y
E
I
S
N
H
A
N
G
L
Y
A
A
T
Y
L
S
L
D
D
S
G
----
V
S
L
M
-
N
K
N
D
D
D
I
D
---
D
Y
N
-
L
K
W
--
F
L
-
F
----
P
I
--------
D
D
----
D
-
Q
Y
-
I
---
I
T
SYAANNCK
V
W
N
V
N
N
D
K
I
N
V
S
T
YSSTNS
I
Q
K
------
W
-------------
Q
I
K
A
N
GS
S
Y
V
I
Q
S
DNG
K
V
L
T
A
G
T
GQALG
L
I
--------------
R
L
T
D
E
S
S
N
N
P
N
--
Q
Q
W
N
L
T
S
V
Q
T
I
Q
L
P
Q
K
------
P
I
I
D
T
K
L
KDYPKYSGNIDNGTSPQLM
G
W
T
L
V
-
P
C
I
M
VND
P
--------
N
I
D
K
N
T
Q
I
K
-----
T
T
P
-------
Y
Y
I
-
L
K
-
K
Y
Q
Y
W
Q
R
A
V
G
SN
V
A
L
R
P
H
E
K
K
S
Y
T
Y
E
W
G
T
E
I
-
D
-
Q
K
T
T
--
I
I
N
T
L
G
F
Q
I
--------
N
ID
S
G
M
K
--------
F
D
I
P
E
VGGGTDE
I
--
K
T
Q
L
N
E
E
L
K
IEYSHETKIM
E
K
Y
Q
----
E
Q
------
S
E
I
D
N
P
T
D
Q
S
-----
M
N
S
I
G
-
F
---
L
T
I
T
--
S
L
E
L
----
Y
R
Y
N
G
S
E
I
R
------
I
M
Q
I
Q
T
S
D
NDT
Y
--
N
---
V
T
S
Y
------------
P
N
-
H
Q
Q
A
L
L
L
L
T
N
HS
Y
E
E
V
E
E
I
T
NIP
K
S
T
L
I
K
L
K
K
H---
22
Fugue
65.73
19%
-58
* C5 *
-
4MFL
3
?
A:
[23-345]
------------
M
D
P
E
T
V
R
I
A
L
G
L
E
E
R
T
A
A
W
L
T
E
L
D
-
E
L
G
-
P
P
A
E
---
P
V
R
-
L
P
R
G
E
E
A
-
R
----
D
L
L
R
R
L
EV
P
E
L
D
----
A
-
E
E
-
I
---
V
A
------------
A
A
P
D
P
D
R
D
P
------
A
L
W
------
W
-------------
L
L
E
R
-------------
T
H
H
A
I
-------
V
R
H
MGDHRAKPRGGP
P
L
P
Y
E
G
G
A
A
A
R
--
Y
F
H
V
Y
V
F
L
A
T
V
P
-
A
V
R
R
F
H
A
E
R
G
I
P
D
E
V
G
--------------------
W
E
T
L
--
T
Q
L
---
G
--------
E
L
V
A
I
H
R
R
K
-----
Y
G
Q
G
G
M
N
MQ
W
W
T
T
-
Y
H
-
L
R
G
I
L
Y
R
L
G
R
--
L
Q
F
S
L
A
T
G
----------------
K
D
--
G
T
P
H
L
G
L
A
V
P
EWGGPLL
P
--
K
A
Y
D
--------
E
S
L
H
R
-------
A
--
R
P
F
F
D
R
H
F
P
-------------
E
HGAR
V
A
------
W
G
S
S
W
M
L
D
P
Q
-----
L
E
E
Y
L
-
T
EDS
N
I
I
Q
--
L
A
R
F
----
W
T
L
T
D
S
A
P
E
PGNADG
D
S
S
I
L
E
--------
F
---
V
F
R
Y
NGQPLDELPQRS
S
L
-
E
R
A
V
I
A
H
L
K
A
G
R
H
W
H
M
R
T
G
F
V
K
L
P------------
23
Fugue
62.81
17%
-77
- C5 -
-
4OVY
8
?
A:
[1-305]
---------
E
E
P
L
P
S
---
W
N
D
S
A
A
R
R
A
I
L
E
Y
V
K
S
V
T
-
T
E
G
S
P
R
------------------------------
F
V
P
V
----
S
-
E
R
-
I
---
V
T
------------
F
D
N
D
G
T
L
W
C
------
E
Q
P
M-----
Y
-------------
V
Q
L
A
-------------
F
A
L
D
R
-------
V
--------------
R
L
L
A
D
K
H
P
E
W
R
TE
E
P
F
R
A
V
I
E
K
D
L
P
-
A
L
A
------
K
L
G
A
K
G
L
--------------------
T
E
L
T
M
A
T
H
A
---
G
MT
D
D
E
F
E
N
I
V
T
E
W
I
R
K
A
RHPKF
H
R
P
Y
T
E
C
--
V
Y
Q
P
M
L
--
E
L
L
A
F
L
R
Q
H
E
--
F
------
K
T
F
I
V
S
G
A
G
I
E
F
M
R
P
W
A
K
E
--
V
Y
G
I
P
P
E
Q
V
--------
I
--
G
S
S
V
--------
K
L
K
Y
E
-------
L
R
D
G
K
P
V
L
V
R
L
A
-------------
E
----
L
N
FIDD
Q
A
G
K
P
V
G
I
R
Q
V
I
-----
G
R
R
P
V
M
A
---
V
G
N
S
--
D
G
D
Y
E
M
L
E
Y
V
T
S
G
P
A
N
G
------
L
G
L
I
V
H
--------
H
TDA
V
R
E
F
------------
A
Y
D
R
Q
S
P
F
G
R
L
D
R
A
L
T
D
A
TSKG
W
I
V
I
DMQRDWKVIFPES
15
Fugue
56.71
17%
-51
* C4 *
-
5TJA
-
MCLN1_HUMAN
A:
[1-212]
---------
G
S
G
L
S
N
Q
L
A
V
T
F
R
E
E
N
T
I
A
F
R
H
L
F
----
L
L
G
Y
S
D
G
A
---
D
D
T
F
A
A
Y
--
T
R
-
E
----
Q
L
Y
Q
A
I
--
F
H
A
V
----
D
-
Q
Y
-
L
A
LP
D
V
------------
S
L
G
R
Y
A
Y
V
R
G
G
----
G
D
P
------
W
-------------
T
N
G
S
-------------
G
L
A
L
C
-------
Q
--------------
R
Y
Y
H
R
G
H
V
D
P
A
--
N
D
T
F
D
I
D
P
M
V
V
T
-
D
C
I
------
Q
V
------------------------------------------------------------
D
P
P
N
L
T
L
--
K
F
H
K
-
L
V
-
N
V
T
I
H
F
R
L
K
T
--
I
N
-------------------------------------------------
L
--------
Q
S
L
I
N
-------
N
--
E
I
P
D
C
Y
T
F
--------------
S
----
V
L
------
I
T
F
D
---
N
K
A
-----
H
S
G
R
I
-
P
---
I
S
L
E
--
T
Q
A
H
----
I
Q
E
C
K
H
P
S
V
------
F
Q
---------------------------------------
H
G
------------------------------
20
Fugue
55.77
15%
-41
- C2 -
-
5CZL
-
?
A:
[23-337]
-------LP
R
A
W
A
D
T
A
W
E
S
Y
K
S
R
F
M
M
A
D
G
R
I
V
D
T
G
N
G
S
V
S
H
T
E
G
Q
---
G
F
A
-
M
L
L
--
A
V
-
A
K
ND
R
P
A
F
D
K
L
--
W
Q
W
T
----
D
-
K
T
-
L
---
R
N
------------
K
D
N
G
L
F
Y
W
R
------
Y
N
P
------
V
APDPIADKNDA
T
D
G
D
T
L
-------------
I
A
W
A
L
-------
L
--------------
R
A
Q
Q
Q
W
G
D
K
S
Y
--
G
I
A
S
D
A
I
T
A
S
L
L
-
K
S
T
------
V
I
T
F
A
G
H
--------------------
Q
V
M
L
-
P
G
A
K
---
G
--------
F
------
N
R
-----
N
D
H
V
N
L
N
--
P
S
Y
F
-
I
F
-
P
A
W
Q
A
F
A
A
R
T
--
H
L
T
A
W
R
K
L
Q
S
D
G
K
A
L
L
G
K
M
-
A
-
W
G
K
A
QL
P
S
D
W
V
A
L
R
A
--------
D
--
G
R
M
E
PAKEWPPR
M
S
Y
D
A
-------
I
--
R
I
P
L
Y
L
S
W
A
-------------
D
P---
Q
S
------
A
L
L
T
P
W
K
S
W
F
Q
S
Y
PR
L
Q
T
P
A
-
W
---
V
N
V
N
TN
D
V
A
P
----
W
F
M
T
G
G
L
L
A
------
V
R
D
L
T
T
GEAQDD
P
Q
L
---
S
A
Q
D
------------
D
Y
-
Y
S
A
S
L
K
M
L
V
W
L
A
K
N
DR--------------------
1
PsiBlast_PDB
35.20
27%
-56
- C4 -
-
4O6H
-
NCAP_LYCVA
A:
[71-120]
----------------------------------------
F
Q
P
Q
N
---
G
Q
F
-
I
H
F
--
Y
R
-
E
----
P
V
D
Q
K
Q
--
F
K
Q
D
----
S
-
K
Y
-
S
---
H
G
------------
M
-
D
L
A
D
L
F
N
------
A
Q
P
------
G
-------------
L
T
S
S
-------------
V
I
G
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
34.17
28%
-32
- C4 -
-
1NEI
-
YOAG_ECOLI
A:
[1-60]
--------------------------------
M
G
K
A
-
T
Y
T
V
T
V
T
N
NSN
G
V
S
-
V
D
Y
--
E
T
E
T
----
P
M
T
L
L
V
--
P
E
V
A
----
A
-
E
V
-
I
---
K
D
------------
L
V
N
T
V
R
S
Y
D
------
T
E
N
EHDVCG
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
33.83
27%
-59
- C4 -
-
4O6I
3
NCAP_LYCVA
A:
[71-120]
----------------------------------------
F
Q
P
Q
N
---
G
Q
F
-
I
H
F
--
Y
R
-
E
----
P
V
D
Q
K
Q
--
F
K
Q
D
----
S
-
K
Y
-
S
---
H
G
------------
M
-
D
L
A
D
L
F
N
------
A
Q
P
------
G
-------------
L
T
S
S
-------------
V
I
G
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
33.69
15%
-91
- C4 -
-
2KON
-
?
A:
[1-82]
-----------------------
M
N
V
A
H
Y
R
G
Y
E
I
E
P
-
G
H
Q
Y
R
D
D
I
---
R
K
Y
-
V
P
Y
--
A
--------
L
I
R
K
V
--
G
V
P
D
----
R
-
T
P
-
I
---
P
--------------
T
T
Y
P
E
F
Y
D
------
L
E
A
------
D
-------------
A
E
R
V
-------------
S
I
A
C
A
-------
K
--------------
I
I
I
D
S
H
L
D
R
H
D
--
Q
G
L
A
D
L
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
32.57
20%
-93
- C4 -
-
2JZ0
-
DSX_DROME
A:
[17-52]
-------------------------------------------
L
E
---
K
F
R
-
Y
P
W
--
E
L
-
M
----
P
L
M
Y
V
I
--
L
K
D
A
----
D
A
N
I
-
E
---
E
A
------------
S
R
R
I
E
E
G
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
30.92
20%
-126
- C4 -
-
1ZV1
-
DSX_DROME
A:
[17-52]
-------------------------------------------
L
E
---
K
F
R
-
Y
P
W
--
E
L
-
M
----
P
L
M
Y
V
I
--
L
K
D
A
----
D
A
N
I
-
E
---
E
A
------------
S
R
R
I
E
E
G
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
29.88
17%
-28
- C- -
-
4D6K
-
TDIF1_HUMAN
A:
[69-104]
------------------------------------------------------------------
L
L
R
A
V
--
L
Q
P
S
I
N
--
E
-
E
I
-
Q
---
T
V
------------
F
N
K
Y
M
K
F
F
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
28.13
22%
-206
- C4 -
-
4B19
-
?
A:
[6-28]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
I
-----
A
P
V
I
S
-
G
---
C
A
I
A
--
F
F
S
Y
----
W
L
S
R
R
N
----------------------------------------------------------------------------------
7
HHSearch
25.27
9%
32
- C4 -
-
2DO5
-
SF3B2_HUMAN
A:
[6-42]
------------------------------------------------------------
A
----
Q
E
L
Q
A
K
--
L
A
E
I
GAPI
Q
G
N
R
-
E
---
E
L
------------
V
E
R
L
Q
S
Y
T
R
------
Q
T
G
------
I
-------------
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
23.41
17%
-63
- C4 -
-
1Y47
-
?
A:
[1-46]
---------------------------
D
Y
L
R
E
L
Y
K
L
-
E
Q
Q
A
M
K
L
Y
---
R
E
A
-
S
E
R
--
V
G
-
D
----
P
V
L
A
K
I
--
L
E
D
E
----
E
-
K
H
-
I
---
E
W
------------
L
E
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
16.35
14%
-34
- C4 -
-
4BVX
-
SYMC_HUMAN
A:
[180-203]
-----------------------------------------------------------------
E
P
C
Q
R
A
--
A
Q
T
V
------
L
K
-
Q
---
Q
G
------------
V
L
A
L
R
P
Y
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
14.90
28%
59
- C4 -
-
2LAI
-
?
A:
[111-137]
---------------------------------------------------------
S
V
-
M
----
E
Y
L
K
K
T
--
Y
P
G
P
----
D
I
E
R
I
V
---
S
T
------------
L
E
R
H
D
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
14.34
35%
63
- C3 -
-
2JTT
-
CYBP_MOUSE
C:
[192-212]
----------------------------------------------------------
L
-
M
----
N
V
L
K
K
I
--
Y
E
D
G
D---
D
-
D
M
-
K
---
R
T
------------
I
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
14.03
30%
-
- C4 -
-
5LQW
-
SF3B1_YEAST
Q:
[658-713]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--------
L
--
G
S
I
I
--------
N
A
M
Y
C
-------
I
--
T
S
V
M
D
L
D
---------------------------------
P
I
N
Q
I
-----
L
P
T
L
T
-
P
---
I
L
----------------------------------------------------------------------------------------------------
9
HHSearch
13.39
16%
-33
- C4 -
-
2NA9
-
A:
[18-43]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
V
I
-
F
L
T
I
A
V
L
L
A
L
R
F
C
--
G
I
Y
G
Y
R
L
R
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------