@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TZB1: (2017-12-16 )
MKTELDLLKGRSSDLPFKRFFCGISKLKNKKVFDFIYILKDEWQKLEKEKTALIYEEIEMIHKIENIRTIPNYIEAKIFFHH
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------.........10-..-.......20....------....30......----..40........50......-----..60-....-.....70.--.......80.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------MKTE
L
D
L
LKG--RS-SDL
P
F
K
R
F
F
C
G
I
S
------
K
LKNK
K
V
F
D
F
I
Y
----
I
L
K
D
E
W
Q
K
L
E
K
E
K
T
A
L
I
Y
E
E
-----
I
E
M
--
I
H
K
I
-
E
N
I
R
TI
P
N
--
Y
I
E
A
K
I
F
FHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
65.62
20%
69
- C3 -
-
4L9P
8
?
B:
[68-519]
-----------------------------------------------------------------------------------------------VHPGIP
A
L
F
R
E
PPLIHDLLST
E
T
T
E
L
Q
S
E
T
V
N
K
C
L
P
L
L
K
G
IH
N
S
-
Q
K
G
P
F
N
K
Y
--
G
I
P
------
A
L
Q
R
K
D
H
L
E
Y
L
Y
D
S
L
E
D
Y
P
A
S
F
V
A
L
D
A
S
R
P
W
M
V
Y
W
A
-----
L
A
G
--
L
C
L
L
G
E
D
V
T
R
F
R
E
--
R
V
I
S
T
F
T
A
A
Q
NST
G
G
I
G
GGHGQMSH
V
A
S
S
Y
A
A
V
L
S
I
A
M
V
GG
E
E
A
F
K
L
ID
R
K
A
M
W
K
W
L
G
K
L
KQPDGGFTVCEG
G
E
E
D
V
R
G
A
Y
C
A
M
V
V
H
A
L
L
DLPLALPPEA
E
A
R
Q
N
GLETFTDG
L
P
E
Y
L
S
R
C
QTYEGGISGSPGSEAH
G
A
Y
A
F
C
A
L
A
C
L
C
L
L
GRPEV
V
V
P
R
Y
M
N
I
A
T
L
L
P
W
L
S
A
RQYAPEGGFSGRTN
K
L
V
D
GCYSH
W
V
G
N
C
W
P
L
V
Q
A
A
L
D
GTQPLAG
P
K
R
S
S
VGNLYS
R
E
G
L
T
R
Y
I
L
SCCQCKL
G
G
L
R
DKPG
K
H
P
D
S
Y
H
T
C
Y
A
L
T
G
L
S
T
V
Q
Y
Y
H
Y
C
T
DSSVSSKDDF
S
S
A
F
S
W
K
H
D
P
NFASDGQGSDIGVFTENDRLVPFHPIFVIP
H
K
S
A
E
D
I
R
V
W
F
E
N
QSFDL
28
Fugue
59.56
18%
3
- C3 -
-
4O5J
3
?
A:
[27-400]
LKN
L
N
E
K
Y
E
Q
L
S
Q
Y
L
N
Q
V
A
S
L
K
Q
S
I
Q
N
A
N
N
I
E
L
V
N
S
S
L
N
Y
L
K
S
F
T
N
N
N
Y
NSTTQS
P
I
F
N
A
V
Q
A
V
I
T
S
V
L
G
F
W
S
L
Y
AGNYFTFFVGKKVD
S
G
Q
P
A
SVQGNPPFKTIIENCSGIENCAMD
Q
T
T
Y
D
K
M
K
K
L
A
E
D
L
Q
A
A
--
Q
T
-
N
S
A
T
K
G
N
N
L
C
A
L
S
GCAATS
N
P
P
N
S
T
V
S
N
A
L
N
----
L
A
Q
Q
L
M
D
L
I
A
N
T
K
T
A
M
M
W
K
N
-----
I
V
I
S
G
V
S
N
T
-
S
G
A
I
T
S
T
N
--
Y
P
T
Q
Y
A
V
F
N
N
I
K
A
M
I
P
I
L
Q
Q
A
V
T
L
S
Q
S
N
H
T
L
S
A
S
LQAQATGSQTN
P
K
F
A
K
D
I
Y
T
F
A
Q
N
Q
K
Q
V
I
S
Y
A
Q
D
I
F
N
L
F
N
S
IP
A
E
Q
Y
K
Y
L
E
K
AYLKIPNAGSTPTNPYRQVVN
L
N
Q
E
V
Q
T
I
K
N
N
V
S
Y
Y
G
N
R
V
D
A
A
L
S
V
A
R
D
V
Y
N
L
K
S
N
Q
A
E
I
V
T
A
Y
N
D
A
K
T
L
S
E
E
I
S
K
LPH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
58.79
20%
-5
- C2 -
-
1C01
-
AMP1_MACIN
A:
[1-76]
-------------------------------------------------------------------------------------------------------------------------------
S
A
F
T
V
W
S
G
--
P
G
C
N
N
R
A
E
R
Y
S
K
C
G
C
S
------
A
I
H
Q
K
G
G
Y
D
F
S
Y
--------------
T
G
Q
T
A
A
L
Y
N
Q
AGCS
G
V
A
H
--
T
R
F
G
-
S
S
A
R
A
C
N
P
--
F
G
W
K
S
I
F
I
Q
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
48.49
31%
-148
* C3 *
-
2X6P
-
?
A:
[2-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
E
A
L
E
K
K
L
A
A
L
E
S
K
L
-----
Q
A
C
--
E
K
K
L
-
E
A
L
E
H
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
47.93
31%
-113
- C4 -
-
5CZ3
1
VH23_MYXVL
B:
[25-60]
---------------------------------------------------------------------------------------------------------------------------------
V
N
L
F
D
G
--
D
S
--------
Y
G
C
N
I
H
L
-----
K
T
A
T
C
K
Y
I
T
F
I
L
----
V
L
E
P
D
W
E
N
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
47.83
23%
-146
- C3 -
-
4ZQ0
-
?
A:
[79-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
E
----
Q
I
R
V
Y
R
Q
K
I
E
K
E
L
S
D
I
C
N
D
I
-----
L
K
L
--
L
Q
E
-----
Q
F
V
P
R
ST
N
A
D
A
K
V
F
Y
Y
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
46.77
31%
-99
* C4 *
-
5CZ3
1
VH23_MYXVL
A:
[25-60]
---------------------------------------------------------------------------------------------------------------------------------
V
N
L
F
D
G
--
D
S
--------
Y
G
C
N
I
H
L-----
K
T
A
T
C
K
Y
I
T
F
I
L
----
V
L
E
P
D
W
E
N
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
45.65
23%
-105
- C3 -
-
4ZQ0
-
?
D:
[79-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
E
----
Q
I
R
V
Y
R
Q
K
I
E
K
E
L
S
D
I
C
N
D
I
-----
L
K
L
--
L
Q
E
-----
Q
F
V
P
R
ST
N
A
D
A
K
V
F
Y
Y
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
44.02
31%
-
- C3 -
-
2JGO
1
?
A:
[2-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
E
A
L
E
K
K
C
A
A
L
E
S
K
L
-----
Q
A
L
--
E
K
K
L
-
E
A
L
E
H
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
42.84
38%
-89
- C3 -
-
3L4F
-
ARHG7_RAT
B:
[588-611]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
L
V
D
T
V
Y
----
A
L
K
D
E
V
Q
E
L
R
Q
D
N
K
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
41.62
50%
-
- C3 -
-
5K92
-
?
A:
[2-14]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
E
A
L
E
K
K
L
A
A
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
41.37
50%
-
- C3 -
-
5U9T
2
?
C:
[2-15]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
E
A
L
E
K
K
L
A
A
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
40.98
33%
-
- C- -
-
4UOT
-
?
A:
[1-33]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
E
----
Y
L
L
K
E
I
M
K
L
L
K
E
Q
I
K
L
L
K
E
Q
-----
I
K
M
--
L
K
E
L
-
E
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
40.46
54%
-
- C3 -
-
2X6P
-
?
C:
[2-13]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
E
A
L
E
K
K
L
A
A
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
40.09
31%
99
- C3 -
-
1COS
2
?
A:
[1-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
E
A
L
E
K
K
L
A
A
L
E
S
K
L
-----
Q
A
L
--
E
K
K
L
-
E
A
L
E
H
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
38.99
50%
-
- C1 -
-
3H5G
-
?
A:
[2-12]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
E
A
L
E
K
K
L
A
A
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
38.73
38%
-123
- C3 -
-
2K1O
-
?
B:
[28-48]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Y
----
L
S
K
E
E
H
D
V
L
R
R
----
L
A
D
E
E
-----
V
E
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
37.76
11%
-15
- C3 -
-
2JS5
-
?
A:
[1-71]
-----------------------------------------------------------------------------------------------------------------------------
M
S
E
G
A
E
E
L
K
A
--
K
L
-
K
K
L
N
A
Q
---
A
T
A
L
------
K
M
D
L
H
D
L
A
E
D
L
P
----
T
G
W
N
R
I
M
E
V
A
E
K
T
Y
E
A
Y
R
Q
L
-----
D
E
F
--
R
K
S
T
-
A
S
L
E
H
H
H
H
----------
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.59
40%
-
- C3 -
-
4UOT
-
?
E:
[7-31]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
I
M
K
L
L
K
E
Q
I
K
L
L
K
E
Q
-----
I
K
M
--
L
K
E
L
-
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
35.11
37%
90
- C3 -
-
2W6B
-
ARHG7_RAT
A:
[587-611]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
S
L
V
D
T
V
Y
----
A
L
K
D
E
V
Q
E
L
R
Q
D
N
K
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------