@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TZE6: (2017-12-16 )
MVTNMVIFLTVLVYGVNFLVYMYLKINHIKDYVEKIAIYFGTNMTLLFTSSIFLFFGKIVEDGILVFE
Atome Classification :
(17 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..------.....-.20.-.--......30........------40........50--------------..---......-----------60------------..------......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVT
N
M
V
I
F
L
T
V
L
V
------
Y
G
V
N
F
-
L
V
Y
M
-
Y
--
L
K
I
N
H
I
K
D
Y
V
E
K
I
A
I
Y
------FGT
N
M
T
L
L
F
T
S
S
--------------
I
F
---
L
F
F
G
K
I
-----------V-------------ED------
G
I
L
V
FE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
66.87
27%
-89
* C3 *
-
1MOL
-
MONB_DIOCU
A:
[1-94]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
E
W
E
I
I
D
IG
P
F
T
Q
N
L
G
K
F
A
V
D
E
E
------
N
K
I
G
Q
---
Y
G
-
R
--
L
T
F
N
K
V
I
R
P
C
M
K
K
T
I
Y
E
N
EREI
K
G
Y
E
Y
Q
L
Y
V
Y
A
S
--------------
D
K
---
L
F
R
A
D
I
-----------
S
-------------
E
D
YKTR
G
R
K
L
L
R
F
N
G
PVPPP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
51.36
17%
-50
- C4 -
-
2VJX
24
?
A:
[3-839]
NDT
S
E
V
M
L
LDTG
W
E
F
S
QSGTE
K
W
M
P
A
T
V
PGT
V
H
Q
D
L
I
S
H
ELLPNPFYGMNEKKIQWVEN
E
D
W
E
Y
R
T
S
F
I
V
S
E
E
Q
L
N
RD
G
I
Q
L
I
F
EGLDTY
A
D
V
Y
L
NGSLLLKADNMF
V
G
Y
T
L
P
V
KSVLRK
G
E
N
H
L
Y
I
Y
F
H
S
P
I
R
Q
T
L
P
Q
Y
A
S
N
GFNYPADNDHHEKHLSVFSRKAPYSYGWDWGIRMVTSGVW
R
P
V
T
L
R
F
Y
D
IATISDYYVRQLSLTDE
N
A
R
L
S
N
E
L
I
V
N
Q
IVP
Q
K
I
P
A
E
V
R
V
N
V
S
L
NGTTV
T
E
V
K
Q
Q
V
T
L
Q
P
G
I
N
H
I
T
L
P
A
E
V
T
NPV
R
W
M
P
NGWGTP
T
L
Y
D
F
S
A
Q
I
A
C
GRIV
A
E
Q
S
H
R
I
G
L
R
T
I
R
V
V
N
E
K
D
KD
G
E
S
F
Y
F
E
V
N
G
I
P
M
F
A
K
G
A
N
------
Y
I
P
Q
D
-
A
L
L
P
-
N
--
V
T
T
E
R
Y
Q
T
L
F
R
D
M
K
E
A
-------
N
M
N
M
V
R
I
W
G
G
G
--------------
T
Y
EN
N
L
F
Y
D
L
A
-----------
D
-------------
E
N
------
G
I
L
V
W
Q
D
F
MFAC
T
P
Y
P
SD
P
T
F
L
K
R
V
E
A
E
A
V
Y
N
I
R
R
L
RNHASLA
M
W
C
GNNE
I
L
E
A
L
K
YWG
F
E
K
K
F
T
P
E
V
Y
Q
G
L
M
H
G
Y
D
K
L
FRE
L
L
P
S
T
V
K
E
FDSD
R
F
Y
V
HSSPYLANWGRPESWGTGDSHNWGVWYGKKP
F
E
S
L
D
T
DLPRFMS
E
F
G
F
Q
S
F
P
E
M
K
T
I
A
A
F
A
APEDYQIES
E
V
M
N
A
H
QKSSI
G
N
S
L
I
R
T
Y
M
E
R
D
YIIPES
F
E
D
F
V
Y
V
G
L
V
L
Q
G
Q
G
M
R
H
G
L
E
A
H
R
R
N
RPYCM
G
T
L
Y
WQLNDSWPVVSWSSIDYYGNWK
A
L
H
Y
Q
A
K
R
A
F
AP
V
L
I
N
P
I
Q
Q
ND
S
L
S
V
Y
L
I
S
DRL
D
T
M
E
Q
M
T
L
E
M
K
V
V
D
FDGKTL
G
K
K
I
Q
V
H
S
L
E
V
P
A
N
T
S
K
C
V
Y
R
A
K
LDGWLT
P
E
D
C
R
R
S
F
L
K
L
I
L
K
D
KSGHQV
A
E
S
V
H
F
FRKTKDLQLPPTSV
S
Y
Q
M
K
Q
T
DG
K
C
E
L
T
L
F
S
SMLAKDIFIETPLQGARYSDNFFDLLPG
E
R
K
K
V
I
I
T
S
PRIKKGEEL
P
V
N
I
K
H
I
R
E
T
Y
K
20
Fugue
45.56
14%
-41
- C4 -
-
1T0Y
-
TBCB_CAEEL
A:
[1-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
E
V
Y
D
L
E
I
T
T
N
A
------
T
D
F
P
M
-
E
K
K
Y
-
P
AG
M
S
L
N
D
L
K
K
K
L
E
L
V
V
G
T
------
T
V
D
S
M
R
I
Q
L
F
D
G
--------------
D
D
---
Q
L
K
G
E
L
TDGAKSLKDLG
V
-------------
R
D
------
G
Y
R
I
H
A
V
D
VTGGNED-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
44.51
15%
-83
- C4 -
-
3GOE
-
A:
[2-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HH
H
H
H
H
K
L
I
T
L
L
L
R
S
------
S
K
S
E
D
-
L
R
L
S
-
I
--
P
V
D
F
T
V
K
D
L
I
K
R
Y
C
T
E
------
V
K
I
S
F
H
---
E
R
I
--------------
R
L
---
E
F
E
G
E
W
-----------
L
DPNDQVQSTELED
E
D
------
Q
V
S
V
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
41.94
13%
-92
* C4 *
-
1WJN
-
A:
[1-97]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSS
G
S
S
G
Q
L
L
T
L
K
I
K
C
SNQPER
Q
I
L
E
K
-
Q
L
P
D
-
S
--
M
T
V
Q
K
V
K
G
L
L
S
R
L
L
K
V
------
P
V
S
E
L
L
L
S
Y
E
S
S
KMPG
R
E
I
E
LENDLQ
P
L
---
Q
F
Y
S
V
E
-----------
N
-------------
G
D
------
C
L
L
V
R
W
S
G
PSSG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
41.42
23%
-270
- C3 -
-
2EF8
-
?
A:
[56-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
L
L
E
V
V
A
S
R
------
L
G
L
P
M
D
I
L
L
K
D
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
39.64
12%
-93
- C3 -
-
3VHS
-
WRIP1_HUMAN
A:
[5-29]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
V
Q
C
P
V
C
Q
Q
-
M
--
M
P
A
A
H
I
N
S
H
L
D
R
C
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
34.91
42%
-
- C2 -
-
5EHB
-
?
B:
[2-13]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
I
-
D
A
L
E
K
L
A
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
34.30
73%
-
- C1 -
-
2XTC
-
TBL1X_HUMAN
A:
[8-18]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
F
-
L
V
Y
R
-
Y
--
L
Q
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
33.83
25%
-133
- C3 -
-
4YG7
-
HIPB_ECOLI
C:
[52-71]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
L
T
T
F
F
K
I
L
Q
S
------
L
E
L
S
M
T
L
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
30.75
13%
-210
- C3 -
-
4I6U
1
?
A:
[51-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
I
K
S
L
E
L
I
M
K
G
------
L
E
V
S
D
V
V
F
F
E
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
28.93
67%
-
- C3 -
-
2XTD
-
TBL1X_HUMAN
A:
[8-19]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
F
-
L
V
Y
R
-
Y
--
L
Q
E
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
22.12
13%
-69
- C3 -
-
1P9C
-
PSMD4_HUMAN
A:
[263-307]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
I
S
Q
-
Q
E
F
G
-
R
--
T
G
L
P
D
L
S
S
M
T
E
E
E
Q
I
A
------
Y
A
M
Q
M
S
L
Q
G
A
E
----------------------
F
G
Q
A
-----------
E
-------------
S
A
------
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
21.80
17%
-90
- C3 -
-
2N28
-
VPU_HV1B1
A:
[15-45]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
I
A
I
V
V
------
W
S
I
V
I
-
I
E
Y
R
K
I
--
L
R
Q
R
K
I
D
R
L
I
D
R
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
19.93
31%
-3
- C3 -
-
1CFG
-
?
?:
[1-22]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
-
Y
--
L
R
I
-
H
P
Q
S
W
V
H
Q
I
A
L
R
------
M
E
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
9.83
19%
-
- C3 -
-
4WFD
-
LRP1_YEAST
E:
[53-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
------
Y
V
L
S
S
-
L
M
F
A
-
N
--
M
K
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
9.75
19%
-
- C3 -
-
4WFC
-
LRP1_YEAST
D:
[53-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
------
Y
V
L
S
S
-
L
M
F
A
-
N
--
M
K
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------