@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TZE8: (2017-12-16 )
MKGPLFVWFFLTNKADDLENRQLSVIIFLYQSVGKKEAREK
Atome Classification :
(19 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-...-.....20....--.--...30........40---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKG
P
L
F
V
W
F
F
L-TNK-ADDLENR
Q
L
S
V
--
I
--
I
F
L
Y
Q
SVG
K
K
E
AREK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
77.39
33%
-185
* C5 *
-
2LLG
-
?
A:
[40-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
Y
V
L
F
E
L
-
T
N
T
-
T
E
K
T
Q
N
I
Q
L
M
I
--
Q
S
F
M
E
V
S
Q
T
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
71.44
12%
-
* C9 *
-
4OZK
-
?
A:
[2-50]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACQ
C
P
D
A
I
S
G
W
T
H
T
-
D
Y
Q
-
C
H
G
L
E
N
K
M
Y
R
H
--
V
--
Y
A
I
C
M
N
G
T
Q
V
Y
C
R
T
E
W
G
S
S
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
69.14
7%
-191
- C6 -
-
2KUY
2
GCCF_LACPN
A:
[1-43]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
A
W
C
W
Y
T
L
-
A
M
C
-
G
A
G
Y
D
S
G
T
C
D
Y
--
M
--
Y
S
H
C
F
G
I
K
H
H
S
S
G
S
S
SYHC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
65.78
14%
-
- C4 -
-
2MQS
-
?
B:
[0-34]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
G
P
--------
G
P
G
-
P
Q
G
I
A
G
Q
R
G
V
V
----------
G
L
G
P
G
P
G
P
G
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
65.43
21%
-
- C5 -
-
3QFG
-
?
A:
[89-120]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
F
K
M
E
I
-
T
A
K
K
D
D
K
D
L
N
P
S
S
I
S
H
D
Y
--
I
N
I
T
Q
D
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
61.81
15%
35
* C6 *
-
1ZTO
-
?
?:
[1-36]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
V
A
M
-------
V
S
A
-
E
S
S
G
C
N
S
H
M
P
-------
Y
G
Y
A
A
Q
A
R
A
R
E
R
E
R
L
A
HS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
61.61
9%
101
- C9 -
-
2ICH
3
?
A:
[3-330]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
A
P
V
V
P
G
K
A
L
E
F
PQDFGA
H
N
D
F
R
I
E
W
W
Y
V
-
T
G
W
-
L
E
T
P
T
G
K
P
L
G
F
--
Q
--
I
T
F
F
R
T
A
S
H
F
A
P
D
Q
L
I
I
A
H
V
A
L
S
D
PAIGKLQ
H
D
Q
K
I
A
R
A
GFDLAYARTGNT
D
V
K
L
DD
W
I
F
V
R
E
TDG
R
Y
R
T
R
I
E
A
ED
F
T
L
T
F
I
L
T
P
SQP
L
M
L
Q
G
ENGFSRKGPGAPQASY
Y
Y
S
E
P
H
L
Q
V
S
G
I
I
N
R
QG
E
D
I
P
V
T
G
T
A
W
L
D
R
E
W
S
SEYLDPNAA
G
W
D
W
I
S
A
NLDDG
S
A
L
M
A
F
Q
I
R
G
KDDSKI
W
A
Y
A
A
L
R
D
ASG
H
T
R
L
F
T
PDQ
V
S
F
H
P
I
R
T
W
R
S
ARTQAVYPV
A
T
R
V
L
TGE
T
E
W
Q
I
T
P
LMDDQELDSRASAG
A
V
Y
W
E
G
A
V
T
F
T
R
DG
Q
P
A
G
R
G
Y
M
E
L
T
GYV
1
HHSearch
49.02
43%
205
- C8 -
-
5L1Z
-
C:
[3-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
A
E
P
Y
K
V
T
S
K
-
E
D
K
L
S
S
R
I
Q
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
48.61
32%
12
* C7 *
-
4EYY
-
?
Q:
[70-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
S
G
Q
Q
E
I
--
Y
--
V
S
L
Y
S
S
D
G
S
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
47.94
43%
222
- C8 -
-
4OGR
-
AFF4_HUMAN
C:
[35-56]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
F
A
E
P
Y
K
V
T
S
K
-
E
D
K
L
S
S
R
I
Q
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
45.30
43%
211
- C8 -
-
4IMY
-
AFF4_HUMAN
I:
[36-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
A
E
P
Y
K
V
T
S
K
-
E
D
K
L
S
S
R
I
Q
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
42.97
41%
261
* C8 *
-
4OR5
-
J:
[6-28]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
L
F
A
E
P
Y
K
V
T
S
K
-
E
D
K
L
S
S
R
I
Q
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
41.88
17%
53
- C7 -
-
3DZ8
1
RAB3B_HUMAN
A:
[11-37]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
-
N
L
Y
-
F
Q
G
N
F
D
Y
M
F
K
L
--
L
--
I
I
G
N
S
S
V
G
K
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
39.87
24%
-3
- C8 -
-
1BC8
1
ELK4_HUMAN
C:
[1-21]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
S
A
I
T
L
W
Q
F
L
-
L
Q
L
-
L
Q
K
P
Q
N
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
39.55
44%
-
- C1 -
-
4ZR7
-
RESE_BACSU
D:
[116-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
M
--
V
F
L
S
Q
S
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
38.74
12%
69
- C6 -
-
2Q6T
-
?
A:
[5-440]
I
P
P
H
S
L
E
A
E
Q
S
V
L
G
S
I
L
L
DSDV
M
D
E
V
E
G
L
L
PSPEAFYA
E
A
H
R
K
I
Y
A
A
M
Q
A
L
R
S
Q
GRPVD
L
V
T
L
S
E
E
L
S
R
R
GQLEEVGG
T
A
Y
L
L
Q
L
S
E
ATPTAAY
A
E
H
Y
A
R
I
V
A
E
K
W
T
L
R
R
L
I
Q
A
A
G
E
A
M
R
L
A
Y
E
EAGS
L
D
E
I
L
D
T
A
G
K
K
I
L
E
V
A
L
T
KTDTE
A
R
P
M
R
E
L
V
H
E
T
F
E
H
I
E
AVRTGF
K
E
L
D
Q
L
IGTLGPG
S
L
N
I
I
A
A
R
P
AMG
K
T
A
F
A
L
T
I
A
Q
N
A
A
L
K
E
G
V
G
V
G
I
Y
S
L
-
E
M
P
-
A
A
Q
L
T
L
R
M
M
C
S
--
E
--
A
R
I
D
M
N
R
V
R
L
G
Q
L
T
D
R
D
F
S
R
L
V
D
V
A
S
R
L
S
E
AP
I
Y
I
D
DTPDLT
L
M
E
V
R
A
R
A
R
R
L
V
S
Q
N
QVG
L
I
I
I
DYLQLMSGPN
R
Q
Q
E
I
A
A
I
S
R
G
L
K
A
L
A
R
E
L
G
I
P
I
I
A
L
S
Q
L
S
RAVEARPNKRPM
L
S
D
L
R
E
S
GSIEQDAD
L
V
M
F
I
Y
R
DEYYNPHSEKAG
I
A
E
I
I
VGKQRN
G
P
T
G
T
V
E
L
Q
F
H
ASH
V
R
F
N
D
L-----------------------------------------------------------------------------------------------
4
HHSearch
37.55
44%
-
- C2 -
-
4ZR7
-
RESE_BACSU
A:
[116-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
M
--
V
F
L
S
Q
S
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
32.14
22%
0
- C- -
-
5FJ8
-
Q:
[42--1]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
I
N
G
P
I
-------------
T
N
K
E
R
S
L
A
V
--
K
--
Y
I
N
F
G
K
T
V
K
D
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
32.04
36%
-
- C3 -
-
1AC5
-
KEX1_YEAST
A:
[50-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
F
F
W
K
F
T
-
N
N
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------