@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TZF8: (2017-12-16 )
MQVATKLGSTPAMDRYLCVRYISGRSIKVMYTGWEIEELKIGGHRHKWNLDLEVP
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...--......10....--..---..20........30.--.--......---40--.........50....-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
Q
V
--
A
TKLGSTP
A
M
D
R
--
Y
L
---
C
V
R
Y
ISG
R
S
I
K
V
M
YT--G--
W
E
I
E
E
L
---
K
---IGG
H
R
H
K
W
N
L
DLEVP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
67.95
29%
-100
- C9 -
-
5T51
-
?
A:
[3-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPT
M
Q
S
T
S
L
L
T
E
H
L
GYP
P
I
S
L
V
D
D
I
I
N
A
V
N
--
E
I
M
Y
K
C
T
N
A
M
E
K
--
Y
L
---
M
Q
R
N
I
I
G
K
------
K
--
D
--
F
S
-
D
E
I
---
K
---
I
G
T
A
K
L
E
S
L
L
E
N
S
V
D
K
N
F
D
K
L
E
L
Y
V
L
R
NILSIPSDL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
49.55
29%
-6
- C9 -
-
1DIO
2
?
A:
[1-551]
MRS
K
R
F
E
A
L
A
K
RPVNQ
D
G
F
V
K
E
WIEEGFIAMESPNDPK
P
S
I
K
I
V
NGAVTELDGKPVSDFD
L
I
D
H
F
I
A
R
YGINLNR
A
E
E
V
M
A
MD
S
V
K
L
A
N
M
L
C
DPNVK
R
S
E
I
V
P
L
T
T
A
MT
P
A
K
I
V
E
V
V
S
H
MN
V
V
E
M
M
M
A
M
Q
K
M
RARR
T
P
S
Q
Q
A
H
V
T
N
VKDN
P
V
Q
I
A
A
D
A
A
E
G
A
W
R
GFD
E
Q
E
T
T
V
AVARY
A
P
F
N
A
I
A
L
L
V
G
S
Q
V
G
RPG
V
L
T
Q
C
S
L
E
E
A
T
E
L
K
L
G
M
L
GHTCYAETISVYGT
E
P
V
--
F
T
D
G
D
D
T
P
W
S
K
G
--
F
L
---
A
S
S
Y
A
S
-
R
G
L
K
M
R
F
T
--
S
--
G
S
G
S
E
V
---
Q
---
M
G
Y
A
E
G
K
S
M
L
Y
L
E
A
R
C
I
Y
I
T
K
A
A
GVQGLQNGSVSC
I
G
V
P
S
A
V
PS
G
I
R
A
V
L
A
E
N
L
I
C
S
S
L
DLECASSNDQTFTHS
D
M
R
R
T
A
R
L
L
MQFLPGTDFISSGYSAVPNYDNMFAGSNEDAED
F
D
D
Y
N
V
I
Q
R
D
L
KVDGG
L
R
P
V
R
E
E
D
V
I
A
I
R
N
K
A
A
R
A
L
Q
A
V
F
A
G
M
GLPPIT
D
E
E
V
E
A
A
T
Y
AHGSKDMPERN
I
V
E
D
I
K
F
A
Q
E
I
I
N
K
NRN
G
L
E
V
V
K
A
L
A
Q
G
GF
T
D
V
A
Q
D
M
L
N
I
Q
K
A
K
L
T
GDYLHTS
A
I
I
V
G
DG
Q
V
L
S
AVNDVNDYAGPAT
G
Y
R
L
Q
G
E
R
W
E
E
I
K
NIPGALDPN
14
Fugue
46.97
16%
60
- C9 -
-
1KOY
-
DFFA_HUMAN
A:
[239-300]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
I
--
L
T
A
L
R
E
K
Q
A
P
E
L
--
S
L
S
S
Q
D
L
E
L
V
T
K
E
D
P
K
A
L
A
V
A
L
N
--
W
D
I
K
K
T
---
E
---
T
V
Q
E
A
C
E
R
E
L
A
L
R
L
Q
QT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
44.76
18%
-45
- C9 -
-
5EKE
1
Y501_SYNY3
A:
[20-336]
--------------------------------------------------------------------------------FQSNATIE
L
S
I
V
I
P
M
Y
NEEDN
L
E
H
L
F
A
R
L
L
E
V
L
T
P
L
K
I
T
Y
E
I
I
C
V
N
DGSKDK
T
L
K
Q
L
I
D
C
Y
Q
S
N
RQ
I
K
I
V
N
L
SRNFG
K
E
I
A
L
S
A
G
I
D
Y
AQGN
A
V
I
P
I
D
ADLQDPPEL
I
H
E
L
V
D
K
W
R
E
GYD
I
V
Y
ATRRSRQGMTEIKIPPNTGD
F
R
L
M
D
R
K
V
--
V
N
A
I
K
Q
L
P
E
R
T
R
--
F
M
KG-
L
F
A
W
V
G
Y
R
Q
T
F
V
L
F
D
--
R
N
Y
W
K
L
W
N
A
---
A
---
L
D
G
I
F
S
F
S
L
L
P
L
K
V
W
T
Y
L
G
S
I
I
S
L
L
S
L
A
Y
A
S
F
L
I
L
K
T
I
TLGDVP
G
Y
A
S
L
M
V
A
I
L
F
L
G
G
V
Q
L
I
S
L
G
V
I
G
E
Y
L
G
R
V
Y
E
E
V
KARPLYLVSDLWGLEYLP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
41.36
23%
59
- C9 -
-
4OYD
-
?
B:
[1-117]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AD
P
K
K
V
L
D
K
A
K
D
Q
A
E
N
R
V
R
E
L
K
Q
K
L
E
E
L
Y
K
E
--
A
R
K
L
D
L
T
Q
E
M
R
R
--
K
L
---
E
L
R
Y
I
A
A
M
L
M
A
I
G
D
I
--
Y
--
N
A
I
R
Q
A
---
K
---
Q
E
A
D
K
L
K
K
A
G
L
V
N
S
Q
Q
L
D
E
L
K
R
R
L
E
E
L
K
E
E
A
S
R
K
A
R
D
Y
G
R
E
F
Q
L
K
L
E
Y
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
40.13
20%
-31
- C5 -
-
1B9W
-
?
A:
[1-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
S
--
E
H
R
C
I
D
T
N
V
P
E
N
--
A
A
---
C
Y
R
Y
L
D
G
T
---------------
E
E
W
---
R
C
--
L
L
Y
F
K
E
D
A
G
K
C
V
P
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
35.73
20%
13
- C6 -
-
1CO4
-
AMT1_CANGA
A:
[1-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
V
IN
G
V
K
Y
A
C
D
S
-----------
C
I
K
--
S
H
K
A
A
Q
C
E
H
N
--
D
--
R
P
L
K
I
L
---
K
---
P
R
G
R
P
P
T
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
35.33
12%
15
* C9 *
-
2LXM
-
VTA1_HUMAN
A:
[1-163]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAA
L
A
P
L
P
PLPAQFKSI
Q
H
H
L
R
T
--
A
Q
E
H
D
K
R
D
P
V
V
A
--
Y
Y
---
C
R
L
Y
A
M
Q
T
G
M
K
I
D
S
K
--
T
--
P
E
C
R
K
F
---
L
---
S
K
L
M
D
Q
L
E
A
L
K
K
Q
L
G
DN
E
A
I
T
Q
E
I
V
G
C
A
H
L
E
N
Y
A
L
K
M
F
L
Y
A
D
N
E
D
R
A
GRFH
K
N
M
I
K
S
F
Y
T
A
S
L
L
I
D
V
I
T
V
F
GELT
D
E
N
V
K
H
R
K
Y
A
R
W
K
A
T
Y
I
H
N
C
L
K
N
GETPQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
33.71
18%
-8
- C9 -
-
1BHI
-
ATF2_HUMAN
A:
[1-38]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
D
D
K
P
--
F
L
---
C
T
A
P
G
C
G
Q
R
F
T
----------
N
E
D
H
L
---
A
---
V
H
K
H
K
H
E
M
T
L
K
F
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
33.51
36%
97
- C1 -
-
1JSU
-
CDN1B_HUMAN
C:
[33-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
Q
R
K
W
N
F
D
F
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
31.31
39%
-0
- C10 -
-
2GK4
-
?
A:
[12-29]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
S
E
A
I
D
--------
S
V
R
S
I
T
N
H
S
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
30.85
39%
-2
* C10 *
-
2GK4
-
?
B:
[12-41]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
S
E
A
I
D
--------
S
V
R
S
I
T
N
H
S
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
27.77
8%
-186
* C8 *
-
3SD4
-
PHF20_HUMAN
B:
[40-52]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
K
V
L
I
H
F
K
--
R
--
W
N
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
23.98
35%
151
- C8 -
-
3GNU
-
?
P:
[81-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Y
D
I
M
Y
S
-----
W
Y
M
P
K
D
SPS
I
---
G
I
G
H
R
H
D
W
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
23.75
36%
15
- C7 -
-
2MW3
-
?
A:
[1-21]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
G
S
S
P
Y
N
D
I
LG
Y
P
---
A
L
I
V
I
Y
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
23.29
27%
-68
- C4 -
-
1HLL
-
A:
[10-20]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
L
D
R
--
Y
W
---
S
I
T
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
20.67
30%
153
- C8 -
-
3ST1
-
?
A:
[80-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
A
L
V
Y
A
-----
W
Y
M
P
K
D
---
E
IST
G
I
G
H
R
H
D
W
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
20.37
35%
182
- C8 -
-
3GNZ
-
?
P:
[81-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Y
A
I
M
Y
S
-----
W
Y
M
P
K
D
---
S
PST
G
I
G
H
R
H
D
W
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
18.51
36%
-
- C2 -
-
5HY3
-
DMD_BPT4
B:
[3-12]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
K
V
V
F
M
--
G
--
W
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
18.40
28%
-
- C9 -
-
3RFI
-
?
A:
[0-37]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
V
S
--
M
E
---
C
K
T
I
V
S
Q
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------