@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TZI4: (2017-12-16 )
MRNYFSVFFSNTQVRTLISQPLDKRCSKASFSVVSQIYAKMWKAIFTKFFLLLETKQLFHNL
Atome Classification :
(19 SA)
-------------------------------------------.........10......--..20.-.......30..-.-.....40-------.-----.-......50..------...--...60.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------MR
N
Y
F
S
V
F
FSN
T
Q
V
R
T
L
--
I
SQ
P
L
-
D
K
R
C
S
K
A
S
F
S
V
-
V
-
S
Q
I
Y
A
K
M
-------
W
-----
K
-
A
I
F
T
K
F
F
L
L
L
------
E
T
K
--
Q
L
FHNL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
75.00
9%
0
- C- -
-
1FJG
-
RS9_THET8
I:
[2-128]
----------------EQYYGTGRRKEAVARVFLRPGNGKVTV
N
G
Q
D
F
N
E
Y
F
Q
G
L
V
R
A
V
A
--
A
L
E
P
L
-
R
A
V
D
A
L
G
R
F
D
A
-
Y
-
I
T
V
R
G
G
G
----------------------
K
S
G
------
Q
I
D
--
A
I
K
L
G
I
ARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
64.25
16%
-118
- C9 -
-
3EWG
2
SPT5_METJA
A:
[1-80]
---------------------------------------------
M
I
F
A
V
R
T
M
V
G
Q
E
K
N
---
I
A
G
L
M
-
A
S
R
A
E
K
E
Q
L
D
V
-
Y
-
S
I
L
A
S
E
S
-------
L
-----
K
G
Y
V
L
V
E
A
E
T
K
G
------
D
V
E
--
E
L
I
K
G
M
PRVRGIV
P
G
T
I
A
IEEIEPLL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
59.94
18%
14
* C9 *
-
2I39
2
N1_VACCC
A:
[19-135]
SH
M
R
T
L
L
I
R
Y
I
L
W
R
N
DNDQTYYN
D
D
F
K
K
L
M
L
L
DELVDDG
D
V
C
T
L
I
K
N
M
R
M
T
L
S
D
G
P
L
L
D
R
--
L
N
Q
P
V
N
N
I
E
D
A
K
R
M
I
A
I
-
S
-
A
K
V
A
R
D
I
GERSEIR
W
-----
E
-
E
S
F
T
I
L
F
R
M
I
------
E
----
T
Y
F
D
D
L
M
I
D
L
Y
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
59.35
16%
-55
* C8 *
-
2EZY
-
BAF_HUMAN
A:
[1-89]
-------------------------------------MTTS
Q
K
H
R
D
F
V
A
E
P
M
G
E
K
P
V
G
S
L
AG
I
G
E
V
L
-
G
K
K
L
E
E
R
G
F
D
K
-
A
-
Y
V
V
L
G
Q
F
-------
L
V
L
KKD
E
-
D
L
F
R
E
W
L
K
D
T
CGAN
A
K
Q
S
R
--
D
C
F
G
C
L
R
E
W
C
D
A
FL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
58.15
16%
-7
- C9 -
-
4MT0
-
?
A:
[1-445]
--------------CTMIP
Q
Y
E
Q
P
KVEVAETFQNDTSVSSIRA
V
D
L
G
W
H
D
Y
F
A
D
P
R
L
Q
K
L
--
I
D
I
A
L
-
E
R
N
T
S
L
R
T
A
V
L
-
N
-
S
E
I
Y
R
K
Q
-------
Y
-----
M
-
I
E
R
N
N
L
L
P
T
L
------
A
A
N
--
A
N
G
S
R
Q
G
S
LSG
G
N
V
S
S
S
Y
N
V
G
L
G
A
A
SYELDLFG
R
V
R
S
S
S
E
A
A
L
Q
G
Y
F
A
S
V
A
N
R
D
A
A
H
L
S
L
I
A
T
V
A
K
A
Y
F
N
E
R
Y
A
E
E
A
M
S
L
A
Q
R
V
L
K
T
R
E
E
T
Y
N
A
V
R
I
AVQGRRDFRRR
P
A
P
A
E
A
L
I
E
S
A
K
A
D
Y
A
H
A
A
R
S
R
E
Q
A
R
N
A
L
A
T
L
I
NRPIPEDLPAGLPLDKQFFV
E
K
L
P
AGL
S
S
E
V
L
L
D
R
P
D
I
R
A
A
E
H
A
L
K
Q
A
N
A
N
I
G
A
A
R
A
A
F
F
P
S
I
R
L
T
G
S
V
G
T
G
S
VELGGLFKSGT
G
V
W
A
F
A
P
S
I
T
L
P
IFTWG
T
N
K
A
N
L
D
V
A
K
L
R
Q
Q
A
Q
I
V
A
Y
E
S
A
V
Q
S
A
F
Q
D
V
A
N
A
L
A
A
R
E
Q
L
D
K
A
Y
D
A
L
S
K
Q
S
R
A
S
K
E
A
L
R
L
V
G
L
R
Y
K
HGVSGA
L
D
L
L
D
A
E
R
S
S
Y
S
A
E
G
A
A
L
S
A
Q
L
T
R
A
E
N
L
A
D
L
Y
K
A
L
GGGLKRDTQT
20
Fugue
55.18
16%
-103
- C8 -
-
3QNS
6
?
A:
[8-318]
----------VARLAPQAVLTPPSA
A
S
L
F
L
V
L
V
A
G
DS
D
D
D
R
A
T
V
C
D
V
I
S
G
I
-------
D
G
--
P
L
K
A
V
-
G
F
R
E
L
A
G
S
L
S
C
-
V
-
V
G
V
G
A
Q
F
-------
W
-----
D
-
R
V
S
A
S
--
S
K
P
------
A
H
L
--
H
P
F
V
P
L
S
G
PV
H
S
A
P
S
T
P
G
D
L
L
F
HIKAAR
K
D
L
C
F
E
L
G
R
Q
I
V
S
A
L
GSAATVVDEVH
G
F
R
Y
F
DSRDLLGFVDGTENPTD
D
D
A
A
D
S
A
LIGDEDPDFRG
G
S
Y
V
I
V
Q
K
Y
L
H
D
M
S
A
W
N
T
LS
T
E
E
Q
E
R
V
I
GRTKLENVELDDDAQPSNS
H
V
T
L
N
T
I
V
D
DDG
V
E
H
D
I
L
R
D
N
M
A
F
G
S
LGEA
E
Y
G
T
Y
F
I
G
Y
A
KDP
A
V
T
E
L
M
L
R
R
M
F
LGEPPGNYD
R
V
L
D
F
S
TAA
T
G
T
L
F
F
V
P
S
R
D
V
L
E
S
LGD---------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
52.56
26%
-360
- C9 -
-
4Y3U
-
PPLA_CANLF
B:
[21-40]
----------------------------------------------------------------------------------
P
Q
Q
A
R
Q
N
-------
L
-----
Q
-
N
L
F
I
N
F
C
L
I
L
------
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
48.69
26%
-163
- C9 -
-
2KYV
-
PPLA_RABIT
E:
[14-40]
-------------------------------------------------------------------------
R
A
S
T
I
E
-
M
-
P
Q
Q
A
R
Q
N
-------
L
-----
Q
-
N
L
F
I
N
F
C
L
I
L
------
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
48.23
22%
-55
- C9 -
-
1CW5
-
CBB2_CARML
A:
[1-48]
--------------------------------------------
V
N
Y
G
N
-------------------
G
V
S
C
S
K
T
K
C
S
V
N
W
-
G
Q
A
F
Q
E
R
-------
Y
-----
T
-
A
G
I
N
S
F
V
S
G
V
------
A
S
G
AG
S
I
G
R
R
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
47.57
12%
-203
- C9 -
-
2KPO
-
?
A:
[1-110]
--------------------------------------------
M
L
L
Y
V
L
I
I
S
N
D
---
K
K
--
L
I
E
E
A
-
R
K
M
A
E
K
A
N
L
E
L
-
R
-
T
V
K
T
E
D
E
-------
L
-----
K
-
K
Y
L
E
E
F
R
K
E
S
------
Q
N
I
--
K
V
L
I
L
V
SN
D
E
E
L
D
K
A
K
E
L
A
Q
K
M
E
I
D
V
R
T
R
K
V
TS
P
D
E
A
K
R
W
I
K
E
F
S
E
E
GGSLEHHHHHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
41.84
14%
-246
- C9 -
-
1BMX
-
?
A:
[3-30]
----------------------------------------------------------------------------
I
L
D
-
I
-
R
Q
G
P
K
E
P
-------
F
-----
R
-
D
Y
V
D
R
F
Y
K
T
L
------
R
A
E
--
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
36.38
19%
-32
- C6 -
-
4MJE
-
GLRX2_SYNY3
A:
[1-27]
-------------------------------------------
M
R
G
S
H
H
H
H
H
H
G
S
A
V
S
A
K
--
I
E
I
Y
T
-
W
S
T
C
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
35.16
8%
-148
- C7 -
-
2NWT
-
VPB21_ARCFU
A:
[1-69]
-------------------------------------------
M
P
K
I
I
E
A
V
Y
E
N
G
V
F
K
P
L
--
Q
K
V
D
L
-
K
E
G
E
R
V
K
I
K
L
E
-
L
-
K
V
E
P
I
D
L
-------
G
-----
E
-
P
V
S
V
E
E
I
K
K
I
------
R
D
G
--
T
W
M
S
S
L
EH
H
H
H
H
H-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
34.05
14%
-
- C1 -
-
1RPR
-
ROP_ECOLX
B:
[44-50]
------------------------------------------------------------------------------------------------------------------------
H
A
D
--
E
L
Y
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
32.66
0%
-
- C3 -
-
1F4N
1
ROP_ECOLX
A:
[45-50]
-------------------------------------------------------------------------------------------------------------------------
A
D
--
E
I
Y
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
32.60
18%
-30
- C2 -
-
1RJU
-
MTCU1_YEAST
V:
[13-23]
--------------------------------------------------------------------
N
E
Q
C
Q
K
S
C
S
C
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
31.48
29%
-
- C4 -
-
3KJL
-
SGF11_YEAST
E:
[12-18]
--------------------------------------------------------------------------------------------------------------------------
N
--
G
I
L
N
N
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
30.14
10%
-18
- C9 -
-
3EXC
-
CAS2B_SULSO
X:
[18-49]
-----------------------------------------------------
R
N
K
L
A
N
N
--
L
K
K
L
G
-
L
E
R
I
Q
R
S
A
F
E
G
-
D
M
D
--
R
M
K
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
29.49
18%
136
- C5 -
-
1AOO
-
MTCU1_YEAST
A:
[17-27]
--------------------------------------------------------------------
N
E
Q
C
Q
K
S
C
S
C
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------