@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TZM0: (2017-12-16 )
MIKNRLIDQMWCLDQNTDTLELIESICFNTVVLDLRAENDNCVTHIIINQKMAQQLSESLRKWAEGENYESN
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-.......20.-.......30--........40...--.....50........60....----------------....70.--------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MI
K
N
R
L
I
D
Q
M
WC-LDQNT
D
T
L
E
L
-
I
E
S
I
CF
N
T
V
--
V
L
D
L
RAENDN
C
V
T
--
H
I
I
I
N
Q
K
M
A
Q
Q
L
S
E
S
L
R
K
W
AE----------------GENYESN--------------------------------------------------------
15
Fugue
69.39
20%
108
- C4 -
-
2KK4
-
Y2094_ARCFU
A:
[1-95]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QGHMD
L
I
C
M
Y
V
F
K
G
E
E
S
-
F
G
E
S
I
D
V
Y
G
D
-
Y
L
I
V
K
V
G
T
E
--
F
L
A
V
P
K
K
S
I
K
S
V
E
DG
R
I
V
I
G
E
F
D
E
E
E
A
R
E
L
G
R
K
W
L
E
E
KSKPVTLEELKSYGF
G
E
E
G
E
G
S
--------------------------------------------------------
2
PsiBlast_PDB
67.10
27%
-65
- C4 -
-
2ZE9
-
PLD_STRAT
A:
[387-439]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
K
S
-
L
D
E
I
S
D
T
L
R
---------
T
R
--
L
V
A
L
T
G
D
N
E
K
A
S
R
--
A
L
C
G
N
L
Q
L
A
S
F
R
S
S
D
A
A
K
W
A
D
----------------
G
K
P
Y
-----------------------------------------------------------
1
PsiBlast_PDB
67.06
27%
-57
- C4 -
-
2ZE4
-
PLD_STRAT
A:
[387-439]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
K
S
-
L
D
E
I
S
D
T
L
R
---------
T
R
--
L
V
A
L
T
G
D
N
E
K
A
S
R
--
A
L
C
G
N
L
Q
L
A
S
F
R
S
S
D
A
A
K
W
A
D
----------------
G
K
P
Y
-----------------------------------------------------------
19
Fugue
66.63
20%
-53
- C4 -
-
4E1P
-
LSR2_MYCTU
A:
[4-58]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
T
V
T
L
V
D
D
F
D
G
-
S
G
A
A
D
E
T
V
E
F
-
G
L
-----------------
D
G
V
T
Y
--
E
I
D
L
S
T
K
N
A
T
K
L
R
G
D
L
K
Q
W
V
A
----------------
A
G
R
R
V
----------------------------------------------------------
20
Fugue
63.65
15%
-18
- C4 -
-
5K0P
1
?
A:
[6-108]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KSPS
L
V
R
L
K
T
R
G
E
S
V
C
P
I
S
K
T
V
D
S
F
E
V
S
V
E
Y
I
P
R
G
A
V
LA
I
E
E
F
K
K
M
V
D
S
Y
R
G
--
R
E
I
L
H
E
E
L
A
V
D
L
L
E
K
V
K
A
A
V
N
----------------
P
P
Y
V
K
V
T
V
K
S
Y
Y
IG
V
E
V
E
V
V
A
E
S
G
GVPPVY---------------------------------
11
HHSearch
62.64
26%
-109
- C4 -
-
2MC4
-
?
A:
[39-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
G
K
--
V
L
S
I
R
Q
D
D
L
R
T
L
---
A
V
I
Y
D
-
Q
S
P
S
V
L
T
E
Q
L
I
S
W
G
--------------------------------------------------------------------------------
13
HHSearch
58.34
26%
-85
- C4 -
-
5TZD
2
?
A:
[42-76]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
G
K
--
V
L
S
I
R
Q
D
D
L
R
T
L
---
A
V
I
Y
D
-
Q
S
P
S
V
L
T
E
Q
L
I
S
W
G
--------------------------------------------------------------------------------
24
Fugue
55.15
19%
152
- C4 -
-
2A9F
-
?
A:
[3-388]
LKNQLGQLA
L
E
Q
A
K
T
F
GGK
L
E
V
Q
P
KVDIKT
K
H
D
L
S
I
A
YTPGV
A
S
V
S
S
A
I
A
K
DKTLAYDLTTKKN
T
V
A
V
I
S
DGTAVLGLGDIGPEAA
M
P
V
M
E
G
K
A
A
L
F
K
A
F
AG
V
D
A
I
P
I
V
L
DTKD
T
E
E
I
I
S
I
V
K
A
L
APTFG
G
I
N
L
E
DISA
P
R
C
F
E
I
E
Q
R
L
I
K
E
CH
I
P
V
F
HDDQH
G
T
A
I
V
V
L
A
A
I
F
N
S
L
K
L
L
KKSLDEVS
I
V
V
N
G
GG
S
A
G
L
S
I
T
R
K
L
L
A
A
GAT
K
V
T
V
V
D
KFGIINEQEAAQLAPD
I
A
K
V
T
N
REFKSGTLEDALEGADI
F
I
G
V
S
A
PGVLK
A
E
W
I
S
K
MAAR
P
V
I
F
AMANPIPEIY
P
D
E
A
L
E
A
GAY
I
V
G
T
GRSDFPN
Q
I
N
N
V
L
A
-------------------
F
P
G
I
F
R
G
--
A
L
D
A
R
A
K
T
----------
I
T
V
E
M
Q
I
A
A
A
K
G
I
A
S
L
V
P
----------------
D
D
A
L
S
T
T
NIIPDA
F
K
E
G
V
A
E
I
V
A
KSVRSVVL--------------------------------
18
Fugue
53.78
15%
-61
- C4 -
-
5E97
2
?
B:
[4-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
V
V
D
-
L
D
F
F
T
Q
E
P
L
H
-
L
V
S
P
S
F
L
S
V
--
T
I
D
A
N
L
A
T
D
P
R
F
L
--
I
L
L
G
S
P
K
L
R
T
L
A
R
G
L
S
P
A
Y
L
R
F
G
--------------
G
T
K
T
D
F
L
I
F
D
PKKE-------------------------------------------------
7
HHSearch
51.36
26%
-171
- C3 -
-
2WY3
1
UL16P_HCMVA
D:
[103-129]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
T
N
L
T
V
G
R
Y
D
C
-
L
R
C
E
N
G
T
T
K
I
-
I
E
R
L
Y
-------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.45
26%
-161
- C3 -
-
2WY3
1
UL16P_HCMVA
B:
[103-129]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
T
N
L
T
V
G
R
Y
D
C
-
L
R
C
E
N
G
T
T
K
I
-
I
E
R
L
Y
-------------------------------------------------------------------------------------------------------------------------
21
Fugue
45.22
26%
-36
- C4 -
-
1SY9
-
B:
[5-23]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
F
R
R
I
A
R
L
V
G
V
L
R
E
W
A
Y
----------------
R
--------------------------------------------------------------
23
Fugue
36.58
21%
128
* C4 *
-
2VOF
-
BBC3_MOUSE
B:
[2-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
W
A
R
E
I
G
A
Q
L
R
R
I
A
D
----------------
D
L
N
A
Q
Y
E
--------------------------------------------------------
6
HHSearch
28.85
7%
-106
* C3 *
-
1Y96
-
GEMI6_HUMAN
A:
[30-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
G
W
V
L
T
-
T
D
P
V
S
A
N
I
V
L
-
V
N
F
L
E
D
-
G
S
---
M
S
V
T
G
I
M
G
H
A
V
Q
--
T
V
E
T
M
N
E
G
D
-------------------------------------------------------------------------------------------
5
HHSearch
27.31
29%
-7
- C4 -
-
4AU7
1
KMT5C_MOUSE
A:
[13-26]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
E
N
D
D
L
A
T
--
S
L
V
L
D
P
----------------------------------------------------------------------------------------------
4
HHSearch
26.37
55%
-
- C2 -
-
2JR2
-
Y2611_COLP3
A:
[37-47]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
N
A
V
T
--
N
I
I
-
A
Q
----------------------------------------------------------------------------------------------
3
HHSearch
25.42
55%
-
- C1 -
-
2OTA
-
Y2611_COLP3
A:
[37-47]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
N
A
V
T
--
N
I
I
-
A
Q
----------------------------------------------------------------------------------------------
14
HHSearch
22.78
29%
0
- C- -
-
4BUP
-
B:
[14-55]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
E
N
D
D
L
A
T
--
S
L
V
L
D
P
----------------------------------------------------------------------------------------------
12
HHSearch
22.78
29%
0
- C- -
-
3S8P
-
B:
[16-54]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
E
N
D
D
L
A
T
--
S
L
V
L
D
P
----------------------------------------------------------------------------------------------
22
Fugue
17.16
9%
0
- C- -
-
1QME
-
PBPX_STRPN
A:
[216-583]
-----------------------------------------------------------------------------------TIS
S
P
L
Q
S
F
M
E
T
Q
M
D
A
F
Q
E
K
VKGK
Y
M
T
A
T
L
V
S
AKTGEIL
A
T
T
Q
R
PTFDADTKEGITEDFVWRDILYQSNYEPGSTM
K
V
M
M
L
A
A
A
I
D
N
NTFPGG
E
V
F
N
SS
E
L
K
I
AD
A
T
I
R
D
W
D
V
N
E
GLTG
G
R
M
M
T
F
S
Q
G
F
A
H
SS
N
V
G
M
T
L
L
E
Q
K
M
G
D
A
T
W
L
D
Y
L
N
R
F
KFGVPTRFGLTD
E
Y
A
G
Q
L
P
ADN
I
V
N
I
A
Q
S
SFGQG
I
S
V
T
Q
T
Q
M
I
R
A
F
T
A
I
A
N
DG
V
M
L
E
PKFIS
A
I
Y
D
PNDQ
T
A
R
K
S
Q
K
E
I
V
G
N
P
V
S
-
K
D
A
A
S
L
T
R
T
N
-
M
V
L
V
G
T
D
P
V
--
Y
G
T
M
Y
N
H
S
T
G
K
P
T
--
V
T
V
P
G
Q
N
V
A
L
K
S
G
T
A
Q
I
A
D
E
K
----------------
N
G
G
Y
L
V
G
LTD
Y
I
F
S
A
V
S
M
S
PAENPD
F
I
L
Y
V
T
V
Q
QPEHYS
G
I
Q
L
G
E
F
A
N
P
I
L
E
R
A
S
A
M
K
D
S
LNL