@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TZM3: (2017-12-16 )
MSNAILKCTILRNLSLKTIALLDKKMLHYLKKGIKYDEFSG
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20....-------....30-------......-..40---------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSNA
I
L
K
C
T
I
LRNLS
L
K
T
I
A
L
L
D
K
K
-------
M
L
H
Y
L
K
-------KGIKYD-EFSG---------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
64.35
45%
-63
- C4 -
-
1XXG
-
ETXG_STAAU
A:
[141-173]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
T
T
N
K
N
M
V
T
I
Q
E
L
D
Y
K
-------
A
R
H
W
L
T
-------
K
E
K
K
L
Y
-
E
F
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
64.25
45%
-37
- C4 -
-
3MC0
-
?
B:
[141-173]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
T
T
N
K
N
M
V
T
I
Q
E
L
D
Y
K
-------
A
R
H
W
L
T
-------
K
E
K
K
L
Y
-
E
F
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
63.21
45%
-54
- C4 -
-
3OWE
-
?
B:
[141-173]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
T
T
N
K
N
M
V
T
I
Q
E
L
D
Y
K
-------
A
R
H
W
L
T
-------
K
E
K
K
L
Y
-
E
F
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
56.81
35%
-182
- C4 -
-
5X2G
-
CAS9_CAMJE
A:
[400-485]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
I
S
F
K
A
L
K
----
L
-------
V
T
P
L
M
L
-------
E
G
K
K
Y
D
-
E
------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
54.75
35%
-181
- C4 -
-
5X2H
-
?
A:
[400-486]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
I
S
F
K
A
L
K
----
L
-------
V
T
P
L
M
L
-------
E
G
K
K
Y
D
-
E
------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
53.25
35%
11
- C4 -
-
4Z13
6
?
A:
[3-519]
LA
P
I
T
A
P
DITSICKDASSGIGNQEGAIRTRKCCPPSLGKKIKDFQFPNDKKV
R
M
R
W
PAHKGT
K
K
Q
V
D
D
Y
R
R
A
I
A
A
M
R
A
LPDDDPRS
F
V
S
Q
A
K
I
H
C
A
Y
C
N
GGYTQVDSGFPD
I
D
I
Q
IHNSWL
F
F
P
F
H
R
W
Y
L
Y
F
Y
E
R
I
L
G
S
L
I
DEPN
F
A
L
P
Y
WKWDEPKGMPISNIFLGDASNPLYDQYRDANHIED
R
I
V
D
LDYDGKDKDIP
D
Q
Q
Q
V
A
C
N
L
S
T
V
Y
R
D
L
VRNGVDPTSFFG
G
K
Y
V
A
GDSPDP
S
V
G
S
V
E
A
G
S
H
T
A
V
H
R
W
V
GDPTQPNNEDMGNFYSAGYD
P
V
F
Y
I
H
H
A
N
V
D
R
M
W
K
L
W
K
E
L
RLPGHVDITD
P
D
W
L
N
A
S
Y
V
F
Y
D
ENK
D
L
V
R
V
Y
NKDCVNLDKLK
Y
N
F
I
E
NSKEVFPWRNSRPPQRRKSAQVATT
G
D
V
K
T
VEQTKFPV
R
L
N
Q
I
F
K
V
R
V
K
R
P
A
V
N
R
T
E
E
E
K
D
Q
A
-------
N
E
V
L
L
I
-------
K
K
I
K
Y
D
---
S
G
K
F
V
K
F
D
V
F
V
N
D
K
L
K
DGVFTTPCDPEYA
G
G
F
A
Q
I
P
HNDV
M
T
S
T
A
R
F
G
L
N
E
L
L
E
D
T
NTEGEE
Y
A
T
V
T
L
V
P
RTGCED
L
T
V
G
E
I
K
I
E
L
V
P
IPK----------------------------------------------------------
7
HHSearch
53.15
19%
-223
- C4 -
-
5C8H
-
A:
[23-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
L
R
S
L
T
P
N
A
R
G
I
F
R
L
L
-------
I
K
Y
Q
L
D
N
QDNPSY
I
G
L
S
F
Q
-
D
F
-----------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
52.88
70%
-283
- C1 -
-
4DS7
-
SP110_YEAST
E:
[9-21]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
S
F
K
T
V
A
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
51.44
33%
-76
- C4 -
-
2MLV
-
?
A:
[1-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
------
T
I
L
R
F
V
A
G
Y
D
I
A
S
H
K
K
K
------------
T
-------
G
G
Y
P
W
E
-
R
G
K
A
---------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
46.75
45%
-13
- C4 -
-
1XEE
-
A:
[36-55]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
L
G
K
L
D
E
R
-------
L
R
N
Y
L
K
-------
K
G
T
K
N
---------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
46.43
24%
-56
- C3 -
-
5B22
2
NECT3_MOUSE
A:
[1-209]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PS
I
I
V
E
P
H
V
T
A
V
W
G
K
N
V
S
L
K
C
L
I
E
V
N
E
T
I
T
Q
I
S
W
E
K
I
H
GK
S
T
Q
T
V
A
V
H
H
P
Q
-------
Y
G
F
S
V
Q
G
D
Y
Q
G
RVLFKNYSLNDA
T
I
T
L
H
NIGFSD
S
G
K
Y
I
C
K
A
V
T
F
PL
G
N
A
Q
S
S
T
T
V
T
V
L
V
E
P
T
V
S
L
I
KGP
D
S
L
I
D
GGNETVA
A
V
C
V
AATGKP
V
A
Q
I
D
W
E
GDL
G
E
M
E
S
S
T
T
S
F
PNE
T
A
T
I
V
S
Q
Y
K
L
FPTRFARG
R
R
I
T
C
V
V
K
H
PALE
K
D
I
R
Y
S
F
I
L
D
I
Q
9
HHSearch
46.13
27%
-56
- C4 -
-
1VH4
-
SUFD_ECOLI
A:
[362-384]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
V
G
R
I
D
D
E
-------
Q
I
F
Y
L
R
S
------
R
G
I
N
Q
Q
-
D
------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
45.46
19%
-356
- C4 -
-
1X0G
-
?
C:
[65-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
A
A
E
-------
A
A
E
L
L
--------
R
G
L
R
V
D
--------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
44.74
27%
-82
- C4 -
-
2ZU0
-
SUFD_ECOLI
A:
[362-384]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
V
G
R
I
D
D
E
-------
Q
I
F
Y
L
R
S
------
R
G
I
N
Q
Q
-
D
------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
43.47
16%
-84
- C4 -
-
2VY4
-
A:
[1-37]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
D
E
V
V
I
C
P
Y
D
S
N
H
H
M
P
K
S
S
L
A
K
H
M
-------
A
S
C
R
L
R
-------
K
----
M
-
G
Y
T
K
---------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
42.40
29%
23
- C4 -
-
4DN7
1
?
B:
[372-393]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
G
K
I
A
K
D
-------
Q
V
E
Y
L
M
A------
R
G
L
T
E
D
-
E
------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
37.85
15%
-15
- C4 -
-
2KIX
-
?
A:
[1-33]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
E
P
F
Q
I
L
S
I
S
S
F
I
L
S
-------
A
L
H
F
I
A
-------
W
T
I
G
H
L
-
N
Q
I
K
R--------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
33.44
19%
99
- C4 -
-
4A54
-
DCP2_SCHPO
B:
[240-291]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
T
T
K
E
K
N
I
S
V
D
V
D
A
D
A
S
S
Q
-------
L
L
S
L
L
K
-------
S
S
T
A
P
S
-
D
L
A
T
P
Q
P
S
T
F
P
Q
P
PVESHSS-----------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
32.94
62%
-
- C4 -
-
3WAS
-
MGP_BACFN
B:
[376-388]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
L
K
N
L
I
E
R
N
L
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
32.52
23%
-22
* C4 *
-
1Q90
3
PETG_CHLRE
G:
[1-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
E
P
L
L
C
G
I
V
L
G
L
V
P
V
T
I
A
G
L
F
V
T
A
-------
Y
L
Q
Y
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------