@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TZN7: (2017-12-16 )
MEIGDKKLNKVNMNKKFVIIGIVVLAIIGIIFSRMTGSSGLEKSSVPLVTQILQEQYNLNRTCDDVTITHDNGDNTYRAKATLDNGSAININVEYYPKKDRVYVEIPYTEVLMLN
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...----.....---.10........20........30------------------.....--....40---...--....---.50..----..--....60......--..70...-------......80..----------------.-..-----------...90..--..-----.---...100.......110...--------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEI----G
D
K
KL---NKVNMNK
K
F
V
I
I
G
I
V
V
L
A
I
I
G
I
-------------------
I
F
S
RM--TGSSGL---EKS--S
V
P
L
---
V
T
Q
I
L
----
Q
E
--QYNLNRTCD
D
V
T
--
I
T
H-DNG-------DN
T
Y
R
A
K
A
TL----------------D-NG-----------
S
A
I
N
I
N
V
--
E
Y
-----Y---PKK
D
R
V
Y
V
EIP
Y
T
E
V
L
M
LN--------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
64.97
17%
-48
- C5 -
-
2I52
1
MPTD_PICTO
A:
[1-121]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
----
Y
D
P
A
E
---
K
Y
F
N
C
T
D
I
Q
R
A
F
-
F
E
A
G
I
K
L
G
A
-------------------
I
F
H
Q
Y
--
T
G
I
-
P
V
---
N
S
E
--
N
A
S
M
---
A
E
E
F
I
----
E
R
--
S
T
M
I
Q
P
F
V
E
N
V
R
--
I
S
I
-
N
N
V
YSYSSLN
E
K
M
L
H
A
E
V
L
I
----------------
N
Y
N
G
-----------
K
K
V
L
G
V
L
--
N
Y
-----
D
---
E
G
L
D
--
Y
P
V
M
Y
A
K
E
V
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
58.16
19%
14
- C3 -
-
1QMY
-
POLG_FMDVO
A:
[1-156]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
L
TLYN
G
E
K
K
T
F
Y
S
R
P
N
N
H
D
N
A
W
L
N
A
I
L
Q
L
F
R
Y
V
E
E
PFF
D
W
V
Y
S
SPENL
T
L
E
A
I
K
Q
L
E
D
L
--
T
G
L
E
L
H
---
E
G
G
--
P
P
A
L
---
V
I
W
N
I
----
K
H
LL
H
T
G
I
G
T
A
S
R
P
S
E
--
V
C
V
-
V
D
G
-------
T
D
M
S
L
A
D
F
H
A
G
I
F
L
K
GQE
H
A
V
F
A
C
V
T
S
-
N
G
-----------
W
Y
A
I
D
D
E
--
D
F
-----
Y
P
W
T
P
D
P
S
D
V
L
V
F
V
P
Y
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
56.44
25%
17
- C2 -
-
2LZ0
-
?
A:
[1-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSH
E
G
E
----
P
V
V
G
M
---
D
K
S
L
F
A
G
N
T
V
I
R
E
I
T
V
Q
P
N
I
G
L
-------------------
L
Y
D
G
M
F-
S
G
C
T
A
L
---
E
K
----------------------------------
L
--
I
L
T
-
G
E
D
-------
P
S
A
Y
S
A
G
D
G
L
----------------
R
-
D
G
-----------
A
D
F
L
I
C
V
P
E
E
A
-----
L
---
D
R
Y
R
R
D
Y
F
W
Q
T
Y
A
A
W
I
Q
P
M
E
Q------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
56.02
33%
-
- C5 -
-
3C3J
-
AGAS_ECOLI
A:
[108-171]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------------------
S
F
G
R
---
S
G
N
S
P
E
---
S
V
A
--
A
V
E
L
---
A
N
Q
F
V
----
P
E
--
C
Y
H
L
P
I
T
C
N
E
A
G
--
A
L
Y
-
Q
N
A
-------
I
N
S
D
N
A
F
A
L
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
55.34
21%
36
- C5 -
-
5LRT
5
DOP_ACIC1
A:
[1-500]
M
H
R
V
M
G
I
E
T
E
Y
G
I
S
V
P
HQPNAN
A
M
A
A
S
S
Q
V
V
N
A
Y
APIGAPAQG
L
A
N
V
I
L
TNG
A
R
L
Y
V
DHA
H
P
E
Y
S
T
PEVTN
P
R
D
A
V
L
W
D
K
A
G
E
R
I
M
A
E
A
A
R
R
A
A
D
LPMGWT
I
Q
L
Y
KNNTDNKG
A
S
Y
G
C
H
E
N
Y
L
M
N
RSTP
F
A
D
I
V
R
H
L
I
P
F
F
V
T
RQVFCGAGRVGIGADGRG
E
G
F
Q
LSQRADFFEVEVGLETTLKRPIINTRDEPHADPEKYRRLH
V
I
I
----
G
D
--------
A
N
M
S
---
E
I
A
T
Y
L
K
L
G
T
T
A
L
-------------------
V
L
A
M
I
--
E
D
G
F
L
S
---
Q
D
F
--
S
V
E
S
---
P
V
G
A
L
----
R
A
--
V
S
H
-------------------------
D
P
T
L
R
Y
Q
L
R
L
----------------
H
-
D
G
R
R
L
--------
T
A
V
Q
L
Q
M
--
E
Y
-----
L
---
E
Q
A
R
K
Y
V
E
D
R
F
G
T
D
V
D
D
M
T
R
D
V
L
D
R
W
E
T
T
L
V
R
L
A
D
DPMQLSRDL
D
W
V
A
K
L
S
I
L
E
G
Y
R
Q
R
E
NLPWSA
H
K
L
Q
L
V
D
L
Q
Y
H
DVRPDRG
L
Y
N
R
L
V
A
R
GRMNLLVD
E
A
A
V
R
T
A
M
H
EPPNDTR
A
Y
F
R
G
R
C
L
A
K
FGAEIAAASWD
S
V
I
F
D
L
PGRD
S
L
Q
R
V
P
TLEPLRGTRAHV
G
D
L
L
D
R
CRS
A
T
E
L
V
A
A
L
T
5
PsiBlast_PDB
47.08
50%
-286
* C4 *
-
4W8J
-
CR1AC_BACTK
A:
[1146-1163]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
E
Y
-----
F
---
P
E
T
D
K
V
W
I
E
I
G
E
T
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
46.13
20%
-71
- C5 -
-
2OPA
-
4OT_BACSU
B:
[12-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
E
Q
---
K
R
N
--
L
V
E
K
---
V
T
E
A
V
----
K
E
--
T
T
G
A
S
E
E
K
I
V
V
F
--
I
E
E
-
M
R
K
-------
D
H
Y
A
V
A
G
K
R
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
45.90
16%
-14
* C6 *
-
1H9R
-
MODE_ECOLI
B:
[79-135]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Q
L
P
G
I
--
I
S
H
I
E
R
G
-------
A
E
Q
C
E
V
L
M
A
L
----------------
P
-
D
G
-----------
Q
T
L
C
A
T
V
--
P
V
NEATS
L
---
Q
Q
G
Q
N
V
T
A
Y
F
N
A
D
S
V
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
45.08
20%
-70
- C5 -
-
2OP8
-
4OT_BACSU
A:
[12-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
E
Q
---
K
R
N
--
L
V
E
K
---
V
T
E
A
V
----
K
E
--
T
T
G
A
S
E
E
K
I
V
V
F
--
I
E
E
-
M
R
K
-------
D
H
Y
A
V
A
G
K
R
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
44.87
16%
-62
- C5 -
-
1SJ5
-
?
A:
[27-116]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
N
R
V
L
P
I
W
I
G
A
A
E
G
H
A
L
-------------------
A
L
-
A
M
--
E
K
M
E
F
P
---
R
P
L
--
T
H
D
L
---
L
L
S
V
L
----
E
S
--
L
---
E
A
R
V
D
K
V
I
--
I
H
S
-
L
K
D
-------
N
T
F
Y
-
A
T
L
V
I
----------------
R
-
D
L
T-----------
A
A
L
I
D
I
--
D
S
-----
R
---
P
S
D
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
40.35
19%
21
- C5 -
-
2EPR
-
A:
[1-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
--
S
G
S
S
G
R
---
T
R
K
Q
V
A
C
E
I
---
C
G
K
I
F
----
R
D
--
V
Y
H
L
N
R
H
K
L
S
H
S
--
G
E
K
-
P
Y
S
-------
S
G
P
S
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
40.25
33%
-422
- C1 -
-
2VR0
6
?
F:
[64-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
N
D
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
40.22
33%
-129
- C4 -
-
2JN4
-
?
A:
[30-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-------
P
A
L
W
G
G
K
V
T
L
----------------
A
-
N
G
W
Q
L
E
L
PAMAAD
T
P
L
P
I
T
V
--
E
A
-----
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
38.65
15%
-2
* C5 *
-
2MH3
-
HES1_HUMAN
A:
[26-95]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
P
--
K
T
A
S
E
H
---
R
K
S
--
S
K
P
I
---
M
E
K
R
R
----
R
A
--
R
I
N
E
S
L
S
Q
L
K
T
L
--
I
L
D
-
A
L
K
-------
K
D
S
S
R
H
S
K
-
L
----------------
E
-
K
A
-----------
D
I
L
E
M
T
V
--
K
H
-----
L
---
R
N
L
Q
R
A
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
36.65
22%
14
- C5 -
-
1SPF
-
PSPC_PIG
A:
[1-35]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
I
P
C
---
C
P
V
N
L
K
R
L
L
V
V
V
V
V
V
V
L
V
V
V
V
I
-------------------
V
G
A
L
L
--
M
G
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
36.65
22%
14
- C5 -
-
1SPF
-
?
?:
[1-35]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
I
P
C
---
C
P
V
N
L
K
R
L
L
V
V
V
V
V
V
V
L
V
V
V
V
I
-------------------
V
G
A
L
L
--
M
G
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
33.24
22%
37
- C6 -
-
1IW4
-
ITRP_HALRO
A:
[1-55]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
M
DC
T
E
F
N
P
L
CRC
N
K
M
--
L
G
D
L
---
I
C
A
V
I
GD
A
K
E
E
--
H
R
N
M
C
A
L
C
C
E
H
P
G
G
F
E
Y
-
S
N
G
-------
P
C
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
33.12
25%
51
- C5 -
-
4N03
1
?
A:
[325-375]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
K
A
C
A
N
K
D
--
L
T
R
-
E
G
L
-------
I
N
A
H
R
S
E
A
N
A
----------------
D
-
D
G
-----------
L
G
T
P
M
N
F
--
T
Y
-----
F
DK-
P
A
T
R
K
T
Y
I
I
K
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
33.07
37%
118
* C7 *
-
5ANB
-
EFL1_HUMAN
K:
[751-790]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
S
V
R
--
A
M
P
L
P
E
E
V
T
Q
I
L
----
E
E
--
N
S
D
L
I
R
S
M
E
Q
L
T
--
S
S
L
-
N
E
G
-------
E
N
T
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
32.26
22%
-139
- C5 -
-
2D35
-
CEDA_ECOLI
A:
[25-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
A
F
V
L
M
G
E
-------------------
S
F
-
L
R
--
S
P
A
F
T
V
---
P
E
S
--
A
Q
R
W
---
A
N
Q
I
R
----
Q
E
--
G
E
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------