@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U1I0: (2017-12-20 )
MIVQLKKDYSSDHAFFITPPAVDETKQKYRNNKLIKEYISVLTEVAKRHDCEVSIFIRNFLNKWIRRIFIMG
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.------....----------.------------.------.-----------30......---..40.......----.50.....-...60..---......70.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
V
Q
L
KKDYSSD
H
A
F
F
ITPPAV------
D
E
T
K
----------
Q
------------
K
------Y-----------RN
N
K
L
I
K
E
---
Y
I
S
V
L
T
E
V
A
K
R----HDCE
V
S
I
F
-
I
R
N
F
L
N
K
---
W
I
R
R
I
FIMG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
86.64
29%
-125
- C1 -
-
1YZF
-
?
A:
[104-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
K
V
I
L
I
T
P
P
Y
A
------
D
S
G
R
----------
R
------------
P
------
E
-----------
R
P
Q
T
R
I
K
E
---
L
V
K
V
A
Q
E
V
G
A
A
----
H
N
L
P
V
I
D
L
-
Y
K
A
M
T
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
79.10
32%
-120
- C1 -
-
1YZF
-
?
A:
[101-146]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
G
S
E
K
V
I
L
I
T
P
P
Y
A
------
D
S
G
R
----------
R
------------
P
------
E
-----------
R
P
Q
T
R
I
K
E
---
L
V
K
V
A
Q
E
V
G
A
A
----
H
N
L
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
73.97
20%
-26
- C1 -
-
3MIL
1
IAH1_YEAST
A:
[1-240]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
D
Y
E
K
F
L
L
F
G
D
S
I
T
E
F
AFNTRPIEDG
K
D
Q
Y
A
L
G
A
A
L
V
N
E
Y
TRK
M
D
I
L
Q
R
G
F
K
GYT
S
R
W
A
L
K
I
L
P
E
I
L
K
H
ESNIV
M
A
T
I
F
L
GANDACSAGPQSVP
L
P
E
F
I
D
N
I
R
Q
M
V
S
L
M
K
S
Y
H
I
--
R
P
I
I
I
G
P
G
L
V
------
D
R
E
K
----------
W
------------
E
------
K
E
K
S
E
E
I
A
L
GYF
R
T
N
E
N
F
A
I
---
Y
S
D
A
L
A
K
L
A
N
E
----
E
K
V
P
F
V
A
L
-
N
K
A
F
Q
Q
E
G
GD
A
W
Q
Q
L
L
T
D
G
L
H
F
S
G
K
G
Y
K
I
F
H
D
E
L
L
K
V
I
E
T
FYPQYHPKNMQYKLKDWRDVLDDGSNIMSLE----------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
73.32
15%
-69
- C1 -
-
4HYQ
1
?
A:
[126-195]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
V
R
A
K
A
P
S
A
N
V
V
V
L
G
Y
P
R
F
------
Y
K
L
N
GTCVAGLT
E
G
E
------------
R
------
T
-----------
A
I
N
G
A
A
D
L
---
L
N
S
V
I
S
K
R
A
A
D
----
H
G
Y
A
Y
G
D
I
-
A
A
A
F
T
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
70.27
19%
-27
- C1 -
-
3BZW
-
?
E:
[152-221]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
L
K
K
L
F
P
D
K
Q
I
V
L
L
T
P
L
H
R
------
S
L
A
N
----------
F
GDKNVQPDESY-
Q
------
N
-----------
G
C
G
E
Y
I
D
A
---
Y
V
Q
A
I
K
E
A
G
N
I
----
W
G
I
P
V
I
D
F
-
N
A
V
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
69.69
19%
-23
- C1 -
-
3BZW
-
?
A:
[153-221]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
K
K
L
F
P
D
K
Q
I
V
L
L
T
P
L
H
R
------
S
L
A
N
----------
F
GDK
N
V
Q
P
D
ESY-
Q
------
N
-----------
G
C
G
E
Y
I
D
A
---
Y
V
Q
A
I
K
E
A
G
N
I
----
W
G
I
P
V
I
D
F
-
N
A
V
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
66.09
19%
-71
- C1 -
-
5UBE
-
?
A:
[7-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
I
K
L
P
R
T
H
K
D
G
H
L
F
E
V
S
E
A
A
I
------
D
W
I
E
----------
Q
------------
Y
------
Q
-----------
H
F
K
G
V
T
K
S
---
I
V
E
L
L
N
L
I
S
L
R
G
L
RS
R
D
G
L
V
S
T
T
E
L
I
D
A
T
D
G
---
Q
L
T
R
A
A
I
Q
Q
R
L
R
A
A
V
A
V
GL
F
K
Q
I
P
V
R
FEEG
L
A
G
K
T
M
L
H
R
F
I
N
P
N
Q
L
I
S-----------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
65.87
17%
-23
- C1 -
-
2HSJ
2
?
B:
[118-181]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
R
D
Y
P
L
T
E
I
K
L
L
S
I
L
P
V
------
N
E
R
E
----------
E
------------
Y
QQAVY-
I
-----------
R
S
N
E
K
I
Q
N
---
W
N
Q
A
Y
Q
E
L
A
S
A
Y
---
M
Q
V
E
F
V
P
V
-
F
D
C
L
T
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
63.80
17%
-17
- C1 -
-
2HSJ
1
?
D:
[118-181]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
R
D
Y
P
L
T
E
I
K
L
L
S
I
L
P
V
------
N
E
R
E
----------
E
------------
Y
QQAVY-
I
-----------
R
S
N
E
K
I
Q
N
---
W
N
Q
A
Y
Q
E
L
A
S
A
Y---
M
Q
V
E
F
V
P
V
-
F
D
C
L
T
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
63.71
10%
-81
- C1 -
-
5MAL
-
?
B:
[125-194]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
D
S
R
A
P
A
A
Q
V
V
V
L
G
Y
P
R
F
------
Y
K
L
G
GSCAVGLSEK
S
------------
R
------
A
-----------
A
I
N
A
A
A
D
D
---
I
N
A
V
T
A
K
R
A
A
D
----
H
G
F
A
F
G
D
V
-
N
T
T
F
A
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
58.80
10%
-36
- C1 -
-
4K7J
2
?
A:
[270-332]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
Q
I
R
D
S
L
P
A
A
G
I
L
I
I
G
A
P
E
S
------
L
K
N
T
----------
L
------------
G
VC----
G
-----------
T
R
P
V
R
L
T
E
---
V
Q
Q
M
Q
R
R
V
A
R
Q
----
G
Q
T
M
F
W
S
W
-
Q
N
A
M
G
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
58.03
23%
12
- C1 -
-
5U9N
2
?
A:
[4-150]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EADYD
W
R
N
E
C
L
R
I
L
N
L
L
R
K
E
---
Q
N
S
F
L
F
E
N
P
V
L
ESNDLT
E
E
T
K
----------
N
------------
R
------
Y
-----------
K
E
V
--
I
P
E
A
C
D
Y
I
T
I
E
K
R
L
N
N
K
----
N
Q
---
T
I
E
-
N
P
H
E
F
E
R
---
L
V
K
L
I
F
S
N
C
M
I
F
N
PNSGECK
W
I
Y
D
S
A
K
Q
S
L
N
K
F
N
N
L
W
N
K
SN
V
F
L
L
Y
S
N
S----------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
57.91
13%
-33
- C1 -
-
4TX1
-
?
A:
[124-182]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
G
P
E
I
L
I
V
S
P
P
P
L
------
C
E
T
A
----------
N
------------
S
A
F
A
A
M
F
A
-----------
G
G
V
E
Q
S
A
M
---
L
A
P
L
Y
R
D
L
A
D
E
----
L
D
C
G
F
F
D
G
-
G
S
V
A
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
56.39
18%
-8
- C1 -
-
1UWK
2
HUTU_PSEPU
A:
[4-557]
NNKYRD
V
E
I
R
A
PRGNKLTAKS
W
L
T
E
A
P
L
R
M
L
M
N
N
L
DPQVAENPKELVVYGGIGRAARN
W
E
C
Y
D
K
I
V
E
T
L
T
R
LEDD
E
T
L
L
V
Q
SGKPV
G
V
F
K
T
H
SNAPR
V
L
I
A
N
SNLVPHWAN
W
E
H
F
N
E
L
D
A
K
GLAMYGQMTAGSWIYIGSQGI
V
Q
G
T
Y
E
T
F
V
E
A
G
R
Q
HYGGSLKG
K
W
V
L
T
A
G
LGGMGGA
Q
P
L
A
A
T
L
A
G
A
C
S
L
N
I
E
SQ
Q
S
R
I
D
F
R
L
E
T
RYVDEQATD
L
D
D
A
L
V
R
I
A
K
Y
T
A
E
GKA
I
S
I
A
L
H
G
N
A
A
E
I
L
P
E
L
V
K
R
GVRPD
M
V
T
D
Q
T
SAHDPLNGYLPAGWT
W
E
Q
Y
R
D
R
A
Q
T
E
P
A
A
V
V
K
A
A
K
Q
S
M
A
V
H
V
Q
A
M
L
D
F
Q
K
Q
G
V
P
--------------------------------------------------------------------
T
F
D
---
Y
G
N
N
I
R
Q
M
A
K
E
----
E
G
V
A
D
A
F
D
-
F
P
G
F
V
P
A
---
Y
I
R
P
L
F
C
R
G
VGP
F
R
W
A
A
LSGE
A
E
D
I
Y
K
T
D
A
K
V
K
E
L
I
PDD
A
H
L
H
R
W
L
D
M
A
R
E
R
I
S
F
Q
GL
P
A
R
I
C
W
V
G
L
G
L
R
A
K
L
G
L
A
F
N
E
M
V
R
S
GELS
A
P
V
V
I
G
R
D
HLDSGSVSSPNAETEAMRDGSDAVS
D
W
P
L
L
N
A
L
L
N
T
A
G
GAT
W
V
S
L
H
H
GGGVGMGF
S
Q
H
S
G
M
V
I
V
CDGT
D
E
A
A
E
R
I
A
R
V
L
T
N
D
P
G
T
G
V
M
R
H
A
D
A
GY
D
I
A
I
D
C
A
K
E
Q
GLDLPMITG
15
HHSearch
55.55
8%
-83
- C1 -
-
4H08
2
?
A:
[103-165]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
I
R
K
Y
A
P
K
A
K
L
I
W
A
N
T
T
P
V
------
R
T
G
E
----------
G
------------
M
KEF---
A
-----------
P
I
T
E
R
L
N
V
---
R
N
Q
I
A
L
K
H
I
N
R
----
A
S
I
E
V
N
D
L
-
W
K
V
V
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
54.14
12%
-2
* C1 *
-
4Q7Q
1
?
A:
[114-184]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
R
Q
L
N
P
E
A
K
I
V
L
I
T
P
M
Q
R
------
N
D
F
V
----------
Y
IADAKN
N
A
F
G
SY
Q
------
K
-----------
K
N
G
Q
T
L
E
E
---
F
A
N
A
V
L
T
I
G
R
Y
----
E
Q
I
P
V
V
D
L
-
Y
H
H
P
L
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
53.79
9%
-17
- C1 -
-
3DC7
-
?
C:
[123-186]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
T
N
W
P
T
V
P
K
L
F
I
S
A
I
H
I
------
G
S
D
F
----------
G
GSFSAV------
T
------
N
-----------
G
L
G
Y
R
Q
S
D
---
Y
E
A
A
I
A
Q
M
T
A
D
----
Y
G
V
P
H
L
S
L
-
Y
R
D
A
G
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
53.36
9%
-27
- C1 -
-
3DC7
-
?
A:
[123-186]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
T
N
W
P
T
V
P
K
L
F
I
S
A
I
H
I
------
G
S
D
F
----------
G
GSFSAV------
T
------
N
-----------
G
L
G
Y
R
Q
S
D
---
Y
E
A
A
I
A
Q
M
T
A
D
----
Y
G
V
P
H
L
S
L
-
Y
R
D
A
G
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
52.83
11%
-58
- C1 -
-
2Q0S
-
?
B:
[129-188]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
P
A
P
K
V
L
V
V
S
P
P
P
L
------
A
P
M
P
----------
H
PWFQLI------
F
------
E
-----------
G
G
E
Q
K
T
T
E
---
L
A
R
V
Y
S
A
L
A
S
F
----
M
K
V
P
F
F
D
A
-
G
S
V
I
S
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
52.59
8%
-112
- C1 -
-
3DCI
-
?
C:
[145-201]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
V
P
K
L
L
I
V
A
P
P
P
C
------
V
A
G
P
----------
G
GEPA--------
G
------
G
-----------
R
D
I
E
Q
S
M
R
---
L
A
P
L
Y
R
K
L
A
A
E
----
L
G
H
H
F
F
D
A
-
G
S
V
A
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------