@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U2G6: (2017-12-22 )
MLKNFKEVIAAILPMTVLIVILTFVFAPLEGEDLASFLVGAAIMMIGMTLFLFGADYSMMEVGDLVGKYMIKKKSLTVLVSLGFAIGIVITIAEPSVQVLGQQVYDISDGEIGRVLLIGIVSVGTGVFLAFALLRVVFKLSYYQLMAIGYIGVLIASFFTSSEFMPIAFDSGGVTTGPVTVPFILALAGGMTSMIKQKKNENDSFGMVGIASLGPILAVMILGVIFQ
Atome Classification :
(16 SA)
----------------------------------.........10---------------..------....----------..20......-..30----........40.--.------.....----.50........60------------.........70----........-----.80........90.....--------...100.------....------.--------------------.110.....-------.-------------.120-...----..-----....130.......-----140---....-....----------150....-----..------------..-.-----160.......170-------.---------------......180----------.......-.190.......200.......210-........----.220.....-------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------MLK
N
F
K
E
V
I
A
A
---------------
I
L
------
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FA-PLE
G
----
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A
A
--
I
------
M
M
I
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M
----
T
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F
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FGAD
Y
S
M
M
-------------
E
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D
L
V
G
K
Y
M
-----IKKK
S
L
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V
-----
L
V
SLG
F
A
I
G
I
V
I
T
IAE
P
S
--------
V
Q
V
L
G
Q
Q------VYDI------S--------------------DGEI
G
R
V
L
L
-------
I
-------------
G
I
---VSV----G
T
-----
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A
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-F-----TSS
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A
FDSG-------G---------------VTTGP
V
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-----------
P
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A-G
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M
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M
I
K
QKKNENDSFGM
V
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---
A
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P
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A
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M
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V
IFQ-------------------------------------------
13
Fugue
82.70
19%
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4LK4
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A:
[32-372]
RIINGSNANSAEWPS
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GADAYQGQF
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CFDSRS
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SYSPSN
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VKTGREQ
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EQG
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T---------------------------
17
Fugue
59.53
17%
-112
- C6 -
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5HGZ
3
NAA60_HUMAN
A:
[2-212]
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LASNFS
V
--------------------
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FRKH
G
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TTN
N
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-
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---
C
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-----------------------------------------------------------
20
Fugue
56.00
21%
-97
- C3 -
-
5TF2
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PREB_HUMAN
A:
[26-404]
---------------------ELYRAPFPLY
A
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GGGAAKTGIK
N
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-
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GD
I
------
L
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DA
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HDNT
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AHEGE
I
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------
A
--------------------
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P
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-------------
G
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DL
K
A
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DQPAG
L
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--
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I
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HKRLRQP
P
P
C
Y
L
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A
-
W
-----
D
G
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N
F
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P
L
R
T
K
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C
-------
G
HEVVS
C
L
D
V
S
ESGT
F
L
G
L
G
T
V
T
G
-----------
S
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A
I
Y
I
A
-
F
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C
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A
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LPE
K
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GSHE
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P
S
R--------------------------------
19
Fugue
50.00
12%
-70
- C8 -
-
1V4E
-
?
A:
[9-288]
---------------------------N
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Y
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K
V
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E
R
I
E
Q
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Q
---------------
F
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------
P
E
Q
I
MKDLPLYGKM
L
R
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F
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K
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VEIG
E
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RRGKETINFMYG
D
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D
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M
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M
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F
A
G
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E
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IGKDGFL
D
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L
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SWLRDF------------------------------
18
Fugue
41.17
10%
-74
* C8 *
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1WMW
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?
A:
[1-328]
------------MVPA
P
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P
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Y
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D
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RRGGK-
M
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GGTFDLR
P
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N
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YGKERA
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AAFQDLPG
K
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VER
1
HHSearch
36.71
20%
-165
- C2 -
-
1JY4
-
?
A:
[21-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
W
H
F
-
V
L
-
G
----------
Y
--
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
28.20
7%
-274
* C7 *
-
2N4X
-
?
A:
[69-124]
-------------------------------------------------------------------------------------------------------
F
F
R
V
V
A
M
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F
--
L
------
L
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A
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----
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A
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-----
S
W
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L
P
-----
S
F
F
F
G
M
L
L
A
F
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
27.22
46%
132
* C9 *
-
3JRU
-
AMPA_XANOR
B:
[263-275]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
T
F
D
T
G
-------
G
---------------
V
N
L
K
T
---------------------------------------------------------------------------------------------------------------
6
HHSearch
25.57
46%
112
- C9 -
-
3JRU
-
AMPA_XANOR
A:
[263-275]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
T
F
D
T
G
-------
G
---------------
V
N
L
K
T
---------------------------------------------------------------------------------------------------------------
14
Fugue
23.41
21%
9
- C4 -
-
1T50
-
ATT_APLCA
A:
[1-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
N
C
D
I
G
-------
N
---------------
I
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Q
C
Q
M
Q
HKNCEDANGCD
T
I
I
E
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C
K
-
T
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C
Q
N
Q
E
F
E
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A
A
----
G
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---
T
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G
P
Q
----------------------------------------------------------
9
HHSearch
22.25
46%
165
- C9 -
-
1LCP
1
AMPL_BOVIN
A:
[251-263]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
T
F
D
S
G
-------
G
---------------
I
S
I
K
A
---------------------------------------------------------------------------------------------------------------
5
HHSearch
20.53
46%
161
- C9 -
-
1GYT
-
AMPA_ECOLI
C:
[271-283]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
T
F
D
S
G
-------
G
---------------
I
S
I
K
P
---------------------------------------------------------------------------------------------------------------
8
HHSearch
20.12
46%
165
- C9 -
-
1LAM
-
AMPL_BOVIN
A:
[251-263]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
T
F
D
S
G
-------
G
---------------
I
S
I
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A
---------------------------------------------------------------------------------------------------------------
11
Fugue
18.92
35%
-54
- C7 -
-
1Q90
3
M:
[2-35]
-------------------------------------------------------------------------------------------------------
E
A
E
F
I
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--
L
------
T
M
V
G
M
----
T
L
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G
L
A
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G
F
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L
L
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R
V
E
S
L
V
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
6.09
83%
-
- C1 -
-
4XPM
-
MEH1_YEAST
A:
[178-183]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
L
T
V
-----------
P
------------------------------------------------------------------------------------------------
4
HHSearch
3.37
13%
157
- C7 -
-
4IKY
-
?
A:
[116-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
V
A
A
-----
L
F
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S
M
A
L
I
V
L
G
T
G
L
L
K
P
N
--------
V
S
S
I
V
G
D
------
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------