@TOME V2.3
(Mar 2018)
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-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U317: (2017-12-24 )
MLEYSGFFIKAVTLKKDIIIVLFFLLLLIGRFILIHYSPLPIIKEKTGSGCSNYMLRKKNP
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.......--------.30........40.......-.------50----------------.....---....60-----------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLEYSGFFIKAVTLKKDIIIVLFFLLLL--------IGRFILIHYSPLPIIKEKTG-S------G-----------------CSNYM---LRKKNP-----------------------------------------------
11
HHSearch
66.97
28%
-359
* C9 *
-
3P9X
-
?
A:
[81-128]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
D
F
V
V
L
A
G
Y
M
R
L
V
G
P
T
L
L
G
A
Y
E
G
R
I
V
N
I
H
P
S
L
L
P
A
F
P
---
G
-
L
------
H
-----------------
A
I
E
Q
A
---
I
R
---------------------------------------------------
10
HHSearch
65.54
28%
-367
- C9 -
-
3P9X
1
?
B:
[81-128]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
D
F
V
V
L
A
G
Y
M
R
L
V
GPTLLGAY
E
G
R
I
V
N
I
H
P
S
L
L
P
A
F
P
---
G
-
L
------
H
-----------------
A
I
E
Q
A
---
I
R
---------------------------------------------------
14
Fugue
65.03
30%
-76
- C8 -
-
4ZFV
2
?
A:
[10-445]
N
V
L
D
F
T
V
L
G
L
N
S
G
TSMD
G
I
D
C
A
L
C
H
F
Y
Q
KTPDA
P
M
E
F
E
LL
E
Y
G
E
V
P
LA
Q
P
I
K
Q
R
V
M
R
M
I
L
E
DTTS
P
S
E
L
S
E
V
N
V
I
L
G
E
H
F
A
D
A
V
R
Q
F
A
A
E
R
NVDLSTID
A
I
A
S
HGQTIWLLSMPEEGQVK
S
A
L
T
M
A
E
G
A
I
L
A
S
R
T
G
I
T
S
I
T
D
F
R
I
S
D
Q
A
A
GRQGAPLI
A
F
F
D
A
L
L
LHHPT
K
L
R
A
C
Q
N
I
G
G
I
A
N
V
C
F
I
P
P
DVDGRRTDE
Y
Y
D
F
D
TGPGN
V
F
I
D
A
V
V
R
H
F
T
N
GEQEYDKDG
A
M
G
K
R
G
K
V
D
Q
E
L
V
D
D
F
L
KMPYFQLDPPKTTGREVFRD
T
L
A
H
D
L
I
R
R
A
E
A
K
GLS
P
D
D
I
V
A
T
T
T
R
I
T
A
Q
A
I
V
D
H
Y
R
R
YAPSQEID
E
I
F
M
C
G
GGAYN
P
N
I
V
E
F
I
Q
Q
S
Y
P
N
T
K
I
M
M
L
D
E
A
G
V
---
P
A
G
A
K
E
A
I
T
F
A
W
Q
G
M
E
A
L
--------
V
G
R
S
I
-----
P
V
P
----
T
R
V
-
E
------
T
-----------------
R
Q
H
Y
V
---
L
G
K
V
S
P
G
LN
Y
R
S
V
M
K
K
G
M
A
FGGDAQQLPWVS
E
M
I
V
K
K
KG
K
V
I
T
NNWAGSHHHH
9
HHSearch
58.73
23%
-274
- C9 -
-
5VYR
2
?
B:
[80-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
D
M
I
I
S
M
H
Y
R
S
L
I
PGRFLKLA
K
K
G
S
V
N
L
H
P
S
L
L
P
A
Y
R
---
G
-
T
------
N
-----------------
S
V
A
W
V
---
I
I
---------------------------------------------------
12
HHSearch
57.44
23%
-398
- C9 -
-
4S1N
-
?
A:
[76-113]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
D
L
V
C
L
A
G
Y
M
K
I
V
G
P
T
L
L
S
A
Y
E
G
R
I
V
N
I
H
P
A
Y
L
P
E
F
P
-------------------------------------------------------------------------------------------
6
HHSearch
51.91
31%
-261
- C9 -
-
5UIN
2
?
A:
[75-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
F
L
S
L
E
F
D
K
I
V
QPSKFN--
H
N
E
L
F
N
I
H
F
S
Y
L
P
K
Y
K
-------------------------------------------------------------------------------------------
18
Fugue
45.50
33%
9
- C7 -
-
1PB5
-
A:
[1-35]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
A
C
E
L
P
E
C
Q
E
D
A
G
-
N
------
K
VCSLQCNNHACGWDGGD
C
S
-----------------------------------------------------------
19
Fugue
38.87
28%
-144
* C8 *
-
3FHP
-
?
A:
[1-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
V
E
Q
C
C
T
-
S
------
I
-----------------
C
S
L
Y
Q
---
L
E
N
Y
C
N
-----------------------------------------------
22
Fugue
38.18
28%
-53
- C8 -
-
4F8F
-
?
A:
[1-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
V
E
Q
C
C
T
-
S
------
I
-----------------
C
S
L
Y
Q
---
L
E
N
Y
C
N
-----------------------------------------------
3
HHSearch
35.22
17%
-277
- C4 -
-
2AXO
-
?
A:
[40-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
V
K
G
V
V
E
L
F
T
S
-
Q
------
G
-----------------
C
A
S
C
---------------------------------------------------------
17
Fugue
34.49
47%
3
- C5 -
-
2MSQ
-
?
A:
[1-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
G
G
-
S
CFGGCW
G
-----------------
C
S
C
Y
A
R
T
C
F
R
D
G
L
P
-----------------------------------------------
21
Fugue
34.11
28%
-108
- C8 -
-
2MPG
-
INS_HUMAN
A:
[1-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
V
E
Q
C
C
T
-
S
------
I
-----------------
C
S
L
Y
Q
---
L
E
N
Y
C
N
-----------------------------------------------
16
Fugue
27.85
11%
-141
* C7 *
-
1CO4
-
AMT1_CANGA
A:
[1-42]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
V
I
N
G
V
K
Y
A
C
D
S
C
I
K
S
--------------------
H
K
A
A
Q
C
E
H
N
D
R
P
L
K
I
L
K
P
R
-
G
------
R
-----------------
P
P
T
T
---------------------------------------------------------
20
Fugue
24.90
17%
33
- C6 -
-
2JM2
-
?
A:
[1-45]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
A
R
C
P
G
C
G
Q
G
V
Q
A
G
C
P
--------------------
G
G
C
V
E
E
E
D
G
G
S
P
A
E
G
C
A
E
A
-
E
------
G
-----------------
C
-------
L
R
R
E
G
Q
-----------------------------------------------
8
HHSearch
24.10
47%
-10
- C9 -
-
4XCZ
2
?
A:
[108-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
I
F
N
I
H
F
S
Y
L
P
A
Y
K
-------------------------------------------------------------------------------------------
13
Fugue
23.70
26%
117
- C8 -
-
1T01
-
B:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
P
L
L
Q
A
A
K
G
L
A
------
G
-----------------
A
V
S
E
L
---
L
R
S
A
Q
P
-----------------------------------------------
7
HHSearch
22.59
40%
-10
- C9 -
-
5UIJ
-
?
A:
[95-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
L
F
N
I
H
F
S
Y
L
P
K
Y
K
-------------------------------------------------------------------------------------------
2
HHSearch
22.54
30%
-71
- C3 -
-
2NA9
-
A:
[34-43]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
I
Y
G
---
Y
R
L
R
R
------------------------------------------------
15
Fugue
18.27
21%
42
- C8 -
-
2YEN
-
GM3C_CONCN
A:
[2-22]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
C
N
G
P
-
K
------
G
-----------------
C
S
S
K
W
---
C
R
D
H
A
R
CC---------------------------------------------
5
HHSearch
17.07
30%
-136
- C2 -
-
2Y9T
-
P63_HUMAN
A:
[553-562]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
R
-
L
------
G
-----------------
C
S
S
C
L
--------------------------------------------------------