@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U425: (2017-12-26 )
MKRNLIIGSILIGGIFGLLPLIAKIAIFAGLALYLFTAYDEYDYQLRTGGHK
Atome Classification :
(14 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20---........-----.30........---40........50.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKRN
L
I
I
G
S
I
L
I
G
G
I
F
G
L
L
P
----
L
I
A
K
I
A
I
F
-----
A
G
L
A
L
Y
L
F
T
AY---D
E
Y
D
Y
Q
LRTGGHK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
53.47
31%
-128
- C4 -
-
4OGQ
14
PETG_NOSS1
G:
[4-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
L
S
G
I
V
L
G
L
I
V
----
V
-----
T
L
-----
A
G
L
F
Y
A
A
Y
K
Q
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
50.68
25%
-45
- C4 -
-
4FIX
3
GLFT2_MYCTU
A:
[21-649]
MS
E
L
A
A
S
LLSRV
I
L
P
R
PGEP
L
D
V
R
K
L
Y
L
E
E
S
TTNARRAHAPTRT
S
L
Q
I
G
A
E
S
E
V
S
FATYFNAFP
A
S
Y
W
R
R
WTTCK
S
V
V
L
R
V
Q
V
T
G
A
G
R
V
D
V
Y
R
T
K
ATG
A
R
I
F
V
E
G
H
D
F
T
G
T
ED
Q
P
A
A
V
E
T
E
V
V
LQPFED
G
G
W
V
W
F
D
I
T
T
DTAVTLH
S
G
G
W
Y
A
TSPAP
G
T
A
N
I
A
V
G
I
P
T
F
NR
P
A
D
C
V
N
A
L
R
E
L
T
AD
P
L
V
D
Q
V
IG
A
V
I
V
PDQGERKVRDHPD
F
P
A
A
A
A
R
L
GSR
L
S
I
H
D
Q
P
NLG
G
S
G
G
Y
S
R
V
M
Y
E
A
L
K
NTDCQ
Q
I
L
F
M
D
DDIRLE
P
D
S
I
L
R
V
L
A
M
H
R
F
AK
A
P
M
L
V
G
G
Q
M
L
NLQEPSHLHIM
G
E
V
V
DRSIFMWTAAPHAEYDHDFAEYPLNDNN
S
R
S
K
L
L
H
R
R
I
D
V
D
Y
----
N
G
W
W
T
C
M
----
I
P
R
Q
V
A
E
E
-----
L
G
Q
P
L
P
L
F
I
K
W
---
D
D
A
D
Y
G
L
R
A
A
E
H
G
Y
P
T
V
TLPG
A
A
I
W
H
MAWSDKDDAID
W
Q
A
Y
F
H
L
R
N
R
L
V
V
A
A
M
HWDGPKAQV
I
G
L
V
R
S
H
L
K
A
T
L
K
H
L
A
C
LE
Y
S
T
V
A
I
Q
N
K
A
I
D
D
F
L
A
G
P
E
H
I
F
S
I
L
ES
A
L
P
Q
V
H
R
I
R
KSYPDAVVLPAASELPPPLHKNKAMKPPVN
P
L
V
I
G
Y
R
L
A
R
G
I
M
H
N
L
TAAN
P
Q
H
H
R
RPEFNVPTQDAR
W
F
L
L
C
T
VD
G
A
T
V
T
T
ADGCGVVY
R
Q
R
D
R
A
K
M
F
A
L
L
W
Q
S
L
R
R
Q
R
Q
L
L
K
R
F
E
E
M
R
R
I
Y
R
D
A
L
PTLSS
K
Q
K
W
E
T
A
L
L
PA
2
HHSearch
48.67
35%
-167
- C4 -
-
1Q90
3
PETG_CHLRE
G:
[4-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
L
C
G
I
V
L
G
L
V
P
----
V
-----
T
I
-----
A
G
L
F
V
T
A
Y
L
Q
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
48.26
17%
-149
- C1 -
-
1E68
-
?
A:
[1-70]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
E
F
G
I
P
A
A
V
A
G
T
V
L
N
V
V
E
A
GGW
V
T
T
I
V
S
I
L
T
A
V
G
S
G
G
L
S
L
L
A
A
A
G
R
---
E
S
I
K
A
Y
L
K
K
E
I
K
K
K
G
K
R
A
V
I
A
W---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
45.48
27%
-72
- C4 -
-
4H0L
2
PETG_MASLA
G:
[4-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
L
D
G
L
V
L
G
L
V
F
----
A
-----
T
L
-----
G
G
L
F
Y
A
A
Y
Q
Q
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
44.29
31%
-379
- C2 -
-
4JS0
1
B:
[4-32]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
L
V
I
S
D
P
I
P
G
A
--
K
P
L
P
----
V
P
P
E
L
A
P
F
-----
V
G
R
M
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
43.29
16%
-94
- C3 -
-
4ZXA
1
?
W:
[16-339]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDVQASPPHAVTGYRSFQLGAFELSRDEYFARITWPAKGETRSHLIPADIFLRAMMRD
V
A
W
G
F
F
Y
G
W
V
N
F
D
H
V
I
G
T
R
N
----
Y
Y
G
K
V
D
L
Y
-----
A
G
-------------
T
F
N
G
T
L
K
A
A
G
V
N
YTENFETPLIMATFKAILRDWTNATFDPFAAPEETGSAFGRKNGENLECIERFRIATKRMPGLQDDSPLRNDLPVNRQFADVSQDEPEVHAAEGFEGELHAFSLFKYLSRSDVTWNPSVTSVCKASLFCPTTEEFILPVFHGNDRVEWFIQMSDEIVWDVGDKDDGNPRARITMRAGDVCAMPADIRHQGYSTKRSMLMVWENATPNLPHLYESGELKPYPIEF----------------------
9
Fugue
32.96
13%
-18
* C3 *
-
4H4N
1
?
A:
[6-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
K
P
I
A
F
K
V
P
P
N
S
K
L
K
V
T
F
F
G
P
Y
N
E
V
I
T
----
N
V
S
I
I
N
Q
L
-----
S
T
P
K
C
Q
T
I
T
R
Y
PNY
T
K
Y
E
T
E
V
R
S
L
S
S
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
29.69
14%
-63
- C4 -
-
2MIC
-
TNR16_RAT
A:
[1-41]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
R
G
T
T
D
N
L
I
P
----
V
Y
C
S
I
L
A
A
-----
V
V
V
G
L
V
A
Y
I
A
F
---
K
R
W
N
S
S
K
Q
N
K
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
27.47
18%
-71
* C4 *
-
2LAT
-
OST4_HUMAN
A:
[1-37]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
D
---------------
V
----
Q
L
A
I
F
A
N
M
-----
L
G
V
S
L
F
L
L
V
V
L
---
Y
H
Y
V
A
V
N
N
P
K
K
Q
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
18.74
19%
-71
- C4 -
-
1CKX
-
A:
[1-26]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
G
T
-----
I
K
E
N
I
I
F
G
V
S
Y
---
D
E
Y
R
Y
R
S
V
I
K
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
18.74
29%
-128
- C4 -
-
1Q90
1
?
R:
[9-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
K
R
N
I
M
N
L
I
L
A
G
G
A
G
L
P
I
T
----
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
16.02
21%
-57
- C4 -
-
2KV5
-
?
A:
[1-33]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
D
L
M
----
S
L
V
I
A
P
I
F
-----
V
G
L
V
L
E
M
I
S
R
V
---
L
D
E
E
D
D
S
R
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
14.29
11%
-94
- C4 -
-
2LZQ
-
A:
[1-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
-----
A
L
V
N
S
Y
L
W
Q
R
W
---
E
N
W
F
W
N
V
T
L
R
P
E
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------