@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U4Q3: (2017-12-27 )
MEQFQGSAKMKKNAKQIVHELYNDISISKDPKYSDILEVLQKVYLKLEKQKYELDPSPLINRLVNYLYFTAYTNKIRFTEYQEELIRNLSEIGRTAGINGLYRADYGDKSQF
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------......-..-.10........20.......-.30........40........---50---------.........60........70........80........90--------........100.......110-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------MEQFQ
G
-
S
A
-
K
M
K
K
N
A
K
Q
I
V
H
E
L
Y
N
DISIS-KDP
K
Y
S
D
I
L
E
V
L
Q
K
V
Y
L
K
L
E
K
---
Q
----------KYEL
D
P
S
P
L
I
N
R
L
V
N
Y
L
Y
F
TAYTNKIR
F
T
E
Y
Q
E
E
L
I
R
N
L
S
E
--------
I
G
R
T
AGIN
G
L
Y
RADYGDKSQF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
91.51
100%
-175
- C3 -
-
2BL8
-
?
A:
[4-103]
------------------------------------------------------------------------------------------------------------------------------------------------
N
A
K
Q
I
V
H
E
L
Y
N
D
I
S
I
S
-
K
D
P
K
Y
S
D
I
L
E
V
L
Q
K
V
Y
L
K
L
E
--------------------
P
S
P
L
I
N
R
L
V
N
Y
L
Y
F
T
A
Y
T
N
K
I
R
F
T
E
Y
Q
E
E
L
I
R
N
L
S
E
--------
I
G
R
T
A
G
I
N
G
L
Y
R
A
D
Y
G
D
K
S
Q
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
91.30
99%
-175
- C3 -
-
2BL8
-
?
A:
[4-103]
------------------------------------------------------------------------------------------------------------------------------------------------
N
A
K
Q
I
V
H
E
L
Y
N
D
I
S
I
S
-
K
D
P
K
Y
S
D
I
L
E
V
L
Q
K
V
Y
L
K
L
E
--------------------
P
S
P
L
I
N
R
L
V
N
Y
L
Y
F
T
A
Y
T
N
K
I
R
F
T
E
Y
Q
E
E
L
I
R
N
L
S
E
--------
I
G
R
T
A
G
I
N
G
L
Y
R
A
D
Y
G
D
K
S
Q
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
90.31
98%
-175
- C3 -
-
2BL8
-
?
A:
[4-103]
------------------------------------------------------------------------------------------------------------------------------------------------
N
A
K
Q
I
V
H
E
L
Y
N
D
I
S
I
S
-
K
D
P
K
Y
S
D
I
L
E
V
L
Q
K
V
Y
L
K
L
--------------------
E
P
S
P
L
I
N
R
L
V
N
Y
L
Y
F
T
A
Y
T
N
K
I
R
F
T
E
Y
Q
E
E
L
I
R
N
L
S
E
--------
I
G
R
T
A
G
I
N
G
L
Y
R
A
D
Y
G
D
K
S
Q
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
86.77
98%
-197
- C3 -
-
2BL7
-
?
A:
[3-81]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
N
A
K
Q
I
V
H
E
L
Y
N
D
I
S
I
S
-
K
D
P
K
Y
S
D
I
L
E
V
M
Q
K
V
Y
L
K
L
E
K
---
Q
----------
K
Y
E
L
D
P
S
P
L
I
N
R
L
V
N
Y
L
Y
F
T
A
Y
T
N
K
I
R
F
T
E
Y
Q
E
E
L
I
R
N
M
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
57.93
20%
-157
- C3 -
-
2ZRR
-
?
A:
[10-92]
-----------------------------------------------------------------------------------------------------------------------------------------
G
D
-
D
R
R
K
K
A
E
V
I
I
T
E
L
L
D
D
L
E
I
D
---
L
G
N
E
S
L
R
K
V
L
G
S
Y
L
K
K
L
K
N
---
E
----------
G
T
--
S
V
P
L
V
L
S
R
M
N
I
E
I
S
N
A
I
K
K
D
G
V
S
L
N
E
N
Q
S
K
K
L
K
E
L
M
S
--------
I
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
53.20
14%
-169
- C3 -
-
2FU2
-
?
A:
[2-79]
--------------------------------------------------------------------------------------------------------------------------------------------
P
S
E
K
E
I
L
D
A
L
S
K
V
Y
S
E
Q
V
I
----
Q
A
D
D
Y
F
R
Q
A
I
F
E
L
A
S
Q
L
E
K
---
E
----------
G
---
M
S
S
L
L
A
T
K
I
D
S
L
I
N
Q
Y
I
L
T
H
Q
F
D
A
P
K
S
I
F
D
L
S
R
L
V
K
T
--------
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
52.69
16%
-103
- C3 -
-
2K19
-
?
A:
[5-93]
-----------------------------------------------------------------------------------------------------------------------------------
K
W
F
S
G
-
G
K
-
E
R
S
N
Q
A
E
N
I
I
T
D
L
L
D
D
L
K
T
D
---
L
D
N
E
S
L
K
K
V
L
E
N
Y
L
E
E
L
K
Q
---
K
----------
S
A
--
S
V
P
L
I
L
S
R
M
N
L
D
I
S
K
A
I
R
N
D
G
V
T
L
S
D
Y
Q
S
K
K
L
K
E
L
T
S
--------
I
S
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
50.20
16%
-17
- C3 -
-
2IP6
-
?
A:
[7-93]
------------------------------------------------------------------------------------------------------------------------------------------
E
-
H
I
K
Q
Q
A
L
D
L
F
T
R
L
Q
F
L
L
Q
K
H
D
T
I
E
P
Y
Q
Y
V
L
D
I
L
E
T
G
I
S
K
T
K
H
---
N
----------
Q
Q
--
T
P
E
R
Q
A
R
V
V
Y
N
K
I
A
S
Q
A
L
V
D
K
L
H
F
T
A
E
E
N
K
V
L
A
A
I
N
E
--------
L
A
H
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
47.13
17%
30
- C3 -
-
2K19
-
?
A:
[1-98]
-------------------------------------------------------------------------------------------------------------------------------MGK
L
K
W
F
S
G
-
G
K
-
E
R
S
N
Q
A
E
N
I
I
T
D
L
L
D
D
L
K
---
T
D
L
D
N
E
S
L
K
K
V
L
E
N
Y
L
E
E
L
K
Q
---
K
----------
S
A
--
S
V
P
L
I
L
S
R
M
N
L
D
I
S
K
A
I
R
N
D
G
V
T
L
S
D
Y
Q
S
K
K
L
K
E
L
T
S
--------
I
S
N
I
---------
R
Y
G
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
45.54
24%
-190
- C3 -
-
3LKU
1
GET4_YEAST
E:
[23-60]
------------------------------------------------------------------------------------------------------------------------------------------------
E
A
H
Q
T
L
R
T
I
A
N
R
Y
V
R
S
---
K
S
Y
E
H
A
I
E
L
I
S
Q
G
A
L
S
F
L
K
---
A
----------
K
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
44.31
24%
-169
- C3 -
-
2WPV
-
GET4_YEAST
C:
[31-68]
------------------------------------------------------------------------------------------------------------------------------------------------
E
A
H
Q
T
L
R
T
I
A
N
R
Y
V
R
S
---
K
S
Y
E
H
A
I
E
L
I
S
Q
G
A
L
S
F
L
K
---
A
----------
K
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
44.01
21%
63
- C3 -
-
4OFZ
-
GOB1_BRUMA
A:
[85-513]
--------------------------------------------------------------------------------------------------------------------------------QT
V
D
D
F
K
N
-
L
M
Y
K
M
Q
E
T
R
R
A
I
V
F
A
L
L
N
E
K
D
L
T
------
K
D
D
V
E
I
L
K
R
A
Y
E
K
L
T
D
---
N
F
Q
R
E
M
C
T
LT
T
K
L
S
V
N
I
G
D
E
T
R
G
L
E
K
D
L
K
Y
L
D
A
L
M
N
I
R
R
E
E
P
N
L
L
W
P
I
I
M
S
R
--------
V
D
L
F
S
I
L
A
N
Y
H
P
K
G
---
K
E
T
F
L
K
E
Y
E
D
T
V
K
F
L
K
T
F
I
S
S
E
A
I
TG
K
K
P
I
F
I
T
D
W
DGTMKDYCSQYATNLQP
V
Y
S
A
V
G
M
T
R
F
A
A
S
FTR
I
S
A
V
L
T
AGPLRGPGILDLTAMPIDGP
V
M
F
S
G
SWGR
E
W
W
L
SG
K
R
V
V
H
QDGITDEG
F
N
A
L
Q
R
L
D
D
E
M
K
D
L
LHTSPFALVGSG
V
Q
R
K
VD
R
L
T
L
G
VQTVCHHVT
S
E
L
S
N
R
Y
Q
M
A
V
K
E
R
MHNSQI
L
V
F
D
PSTELEVEVVAHNSGIIWN
K
G
N
G
V
E
R
L
I
K
S
L
GDSLQSP
G
K
I
L
I
C
G
D
T
LSD
I
P
M
V
R
Q
A
V
K
Q
NPD
G
V
L
A
I
F
V
GAK
M
S
L
R
E
E
V
K
Q
V
I
GDESR
C
C
F
V
SC
P
D
V
I
H
A
A
M
S
Q
I
L
N
E
HCIG
34
HHSearch
41.73
11%
-156
- C3 -
-
5LFI
-
LCIA_LACLL
A:
[27-99]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
E
N
E
L
R
S
M
L
A
T
A
L
E
K
---
D
I
S
Q
E
E
R
N
A
L
N
I
A
E
K
A
L
D
N
---
S
----------
E
---
Y
L
P
K
I
I
L
N
L
R
K
A
L
T
P
L
A
I
N
--
R
T
L
N
H
D
L
S
E
L
Y
K
F
I
T
S
--------
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
39.76
15%
-53
- C3 -
-
1IUR
-
A:
[1-88]
-------------------------------------------------------------------------------------------------------------------------------------
M
H
H
-
H
H
-
H
H
L
V
P
R
G
S
I
L
K
E
V
T
S
V
V
E
Q
A
-
W
K
L
P
E
S
E
R
K
K
I
I
R
R
L
Y
L
K
W
H
P
---
D
----------
K
N
P
-------------------
E
N
H
D
I
A
N
E
V
F
K
H
L
Q
N
E
I
N
R
--------
L
E
K
Q
A
F
L
D
Q
--
N
A
D
R
A
S
R
R
T
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
38.55
11%
-50
- C3 -
-
1TDP
-
CB2I_CARML
A:
[7-85]
------------------------------------------------------------------------------------------------------------------------------------------------
T
L
Y
L
N
L
S
E
A
Y
K
D
P
----
E
V
K
A
N
E
F
L
S
K
L
V
V
Q
C
A
G
K
L
T
A
SNS
E
----------
N
---
S
Y
I
E
V
I
S
L
L
S
R
G
I
S
S
Y
Y
L
S
H
K
R
I
I
P
S
S
M
L
T
I
Y
T
Q
I
Q
K
--------
D
I
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
38.07
41%
-100
- C3 -
-
5US5
-
?
A:
[16-49]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
K
A
I
S
E
T
L
E
T
V
Y
R
A
L
E
E
---
K
----------
G
Y
--
N
P
---
I
N
Q
I
V
G
Y
L
L
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
37.52
16%
1
- C3 -
-
5IPX
-
?
A:
[32-322]
HLF
N
H
L
F
R
Y
H
YPS
W
D
Q
I
L
Q
E
L
D
T
L
S
V
A
T
LNPDC
H
V
P
A
L
N
V
E
K
T
L
Y
L
A
K
T
I
Q
I
L
V
Q
H
R
Q
S
EPY
L
V
P
A
A
R
A
N
L
A
Y
S
L
Q
Q
L
Y
K
L
GN
D
K
I
R
G
V
I
N
G
M
L
P
L
V
D
A
GCIG
F
E
R
E
L
I
K
G
L
P
R
V
L
T
L
Q
YPHTAPC
T
E
W
C
L
S
H
F
V
G
A
S
G
-
R
L
R
S
E
V
R
D
I
L
T
T
H
N
G
T
C
A
P
S
-----
F
E
W
M
A
S
V
V
K
K
F
F
L
V
E
T
V
---
I
----------
Y
E
D
F
Q
D
T
D
F
N
V
Q
L
N
L
C
F
F
W
T
A
V
V
Q
M
Y
Q
R
C
I
Y
E
Q
K
L
V
H
I
I
S
T
S
L
T
L
L
K
S
T
A
R
S
F
F
A
W
Y
D
L
Y
R
P
N
L
G
S
A
A
L
V
K
Y
T
E
H
L
I
R
A
LTPDCS
D
V
E
L
G
E
L
C
S
H
L
H
H
C
K
H
A
L
F
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
37.25
21%
-292
- C3 -
-
5UN7
-
B:
[55-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
V
P
S
S
M
L
C
I
S
E
N
D
Q
L
I
L
S
S
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
37.17
19%
-115
- C3 -
-
2JMP
-
DNAA_MYCGE
A:
[1-100]
----------------------------------------------------------------------------------------------------------------------------------
M
E
Q
F
N
A
-
F
K
-
S
L
L
K
K
H
Y
E
K
T
I
G
F
H
D
K
Y
I
---
K
D
I
N
R
F
V
F
K
N
N
V
L
L
I
L
L
E
N
E
F
---
A
----------
R
N
S
L
N
D
N
S
E
I
I
H
L
A
E
S
L
Y
E
G
I
--
K
S
V
N
F
V
N
-
E
Q
D
F
F
F
N
L
A
K
--------
L
E
E
N
S
R
-
D
T
L
Y
Q
N
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
36.07
15%
-189
- C3 -
-
5L85
-
A:
[29-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
R
Q
L
M
V
N
L
D
Q
---
G
----------
E
---
D
K
A
K
L
M
R
A
Y
M
Q
E
P
L
F
V
E
F
A
D
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------