@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U4R1: (2017-12-27 )
MFLKKELKTSIVWENSKFNREKIVENYEEIFFSHFYLSILKIRS
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10......---..20.--------.......----30........40...--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MF
L
K
K
E
LK
T
S
I
V
WENSK---F
N
R
E
K
--------
I
V
E
N
Y
E
E
----
I
F
F
S
H
F
Y
L
S
I
L
KIRS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
53.40
31%
0
- C- -
-
4DK2
-
?
A:
[61-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
N
V
K
AQ-
P
D
L
Q
N
--------
V
K
I
E
L
T
D
----
I
L
--
H
F
S
L
S
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
52.25
18%
47
- C5 -
-
4Z24
1
YR135_MIMIV
A:
[4-652]
------------NLTGD
I
V
I
I
G
AG
A
A
G
S
L
L
A
H
Y
L
A
R
F
S
N
M
K
I
I
L
L
E
AGHSHFNDPVVTDPMGFFGKYNPPNENISMSQNPSYSWQGAQEPNTGAYG
N
R
P
I
I
A
H
G
MGFGGSTMINRLNLVVGG
R
T
V
F
D
NDWPVGWKYDDV
K
N
Y
F
R
R
V
L
V
D
I
NPVRDNTKA
S
I
T
S
V
A
L
D
A
L
R
I
I
A
E
Q
Q
I
A
S
GEPVDF
L
L
N
K
A
T
G
N
V
P
N
V
E
K
T
T
P
---
D
A
V
P
L
--------
N
L
N
D
Y
E
G
VNS
V
V
A
F
S
S
F
Y
M
G
V
N
Q
L
S
D
GNYIRKY
A
G
N
T
Y
LNRNYVDENGRGIGKFSG
L
R
V
V
S
D
A
V
V
D
R
IIFKGNRAV
G
V
N
Y
I
D
REG
I
M
H
Y
V
K
V
N
K
E
V
V
V
TSGAFY
T
P
T
I
L
Q
R
S
GIGD
F
T
Y
L
S
S
I
GVKNLVYNNPLVGTG
L
K
N
H
Y
S
P
V
T
I
T
R
V
H
G
E
P
S
E
V
S
R
F
L
SNMAANPTNMGFKGLAELGFHRLDPNKPANANT
V
T
Y
R
K
Y
Q
L
M
M
T
A
G
VGIP
A
E
Q
Q
Y
L
S
GLSPSSNN
L
F
T
L
I
ADDIRFA
P
E
G
Y
I
K
I
GTPNIPRDVP
K
I
F
F
N
T
F
V
T
Y
T
P
T
SAPADQQ
W
P
I
A
Q
K
T
L
A
P
L
I
S
A
L
L
G
Y
D
I
I
Y
Q
T
L
M
S
M
N
Q
T
A
R
D
S
GFQ
V
S
L
E
MVYPL
N
D
L
I
Y
K
L
H
N
G
L
A
T
YGANWWHYFVPTLVGDDT
P
A
G
R
E
F
A
D
T
L
S
K
L
S
Y
Y
P
R
VG
A
H
L
D
SHQGCSCSIGRTVDSNLKVIGTQ
N
V
R
V
A
D
LSAAAFPPGGNT
W
A
T
A
S
M
I
G
A
R
A
V
D
L
I
L
GFPYLRDLPVND
V
P
I
L
N
VN
16
Fugue
50.33
25%
-24
- C6 -
-
1B8W
-
DLP1_ORNAN
A:
[1-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
Q
H
R
P
R
D
---
C
E
S
I
N
G
--
V
C
R
H
K
--------
D
T
V
N
C
R
E
----
I
F
L
A
D
C
Y
N
D
G
Q
K
C
C
R
K-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
50.19
22%
-445
- C1 -
-
1TX4
-
A:
[190-198]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
D
H
Q
G
E
----
L
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
45.88
35%
-41
- C9 -
-
1W2Y
2
?
A:
[58-88]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
W
K
N
I
S
SL-
T
N
W
E
N
--------
V
R
I
E
I
V
D
----
I
W
--
H
F
I
L
S
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
45.75
20%
72
- C9 -
-
2K9H
-
?
A:
[1-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGSMVC
D
V
C
H
H
E
C
E
T
A
K
E
L
E
S
H
R
---
Q
S
C
I
N
GQCPYCMT
I
T
E
A
T
E
S
----
A
L
Q
A
H
Y
S
I
C
K
L
T
G
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
38.45
27%
-61
- C9 -
-
2YB0
1
?
E:
[70-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
---
P
D
L
A
N
--------
V
R
I
E
L
V
D
----
I
F
--
H
F
S
L
S
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
37.62
19%
-
* C9 *
-
4RT4
-
BRE2_YEAST
E:
[480-500]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
K
E
Q
I
A
E
D
I
V
W
D
I
I
D
---
E
L
E
Q
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
36.47
38%
-125
- C4 -
-
2K5C
-
?
A:
[77-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
N
D
F
K
G
G
I
D
W
E
N
K
R
---
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
36.34
11%
-191
- C9 -
-
3WMI
-
?
A:
[474-530]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
T
E
N
L
Y
F
Q
S
N
A
D
S
V
Q
N
H
T
F
E
V
E
N
N
T
I
N
G
L
E
---
L
V
E
E
Q
--------
V
H
I
L
Y
A
M
----
V
L
Q
T
H
A
D
V
Q
L
L
K
E
Q
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
35.44
12%
-80
- C8 -
-
1M9O
-
A:
[4-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
T
S
S
R
Y
K
T
E
L
C
---
R
T
---
Y
S
E
S
G
--------
R
C
R
Y
G
A
K
----
C
Q
F
A
H
G
L
G
E
L
R
Q
A
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
34.47
15%
162
- C9 -
-
5H07
-
TNIP2_HUMAN
C:
[21-86]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DC
A
E
V
K
Q
E
L
A
A
S
R
T
A
R
D
A
A
---
L
E
R
V
Q
--------
M
L
E
Q
Q
I
L
----
A
Y
K
D
D
F
M
S
E
R
A
D
R
E
R
A
Q
S
R
I
Q
E
L
E
E
K
V
A
S
L
L
H
Q
VS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
33.22
15%
35
- C9 -
-
1YA0
-
SMG7_HUMAN
B:
[15-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
A
D
M
T
D
S
K
L
G
P
A
E
V
W
--
T
S
R
Q
A
--------
L
Q
D
L
Y
Q
K
----
M
L
V
T
D
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
31.74
20%
9
- C7 -
-
5MQF
-
SRRM2_HUMAN
S:
[1-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
N
G
I
G
L
P
T
P
R
G
S
G
T
N
G
---
Y
V
Q
R
N
--------------------------
L
S
L
V
R
G
R
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
29.60
27%
110
- C9 -
-
2YAY
1
?
A:
[70-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
---
P
D
L
A
N
--------
V
R
I
E
L
V
D
----
I
F
--
H
F
S
L
S
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
28.87
11%
-21
* C8 *
-
2KSS
-
CARS_MYXXA
A:
[21-106]
---------------------------------------------------------------------------------------------------------------------------------------------------MIQDPS
L
I
I
C
H
DVDGAPVRIG
A
K
V
K
VVPHSEDGTISQR
F
L
G
Q
T
G
I
V
V
G
L
V
F
D
D
P
A
TQY
P
D
D
P
L
--------
I
Q
V
L
V
E
G
----
L
G
E
D
L
F
F
P
E
E
L
E
L
A
P
E-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
27.58
24%
-35
- C9 -
-
1OGL
-
?
A:
[69-113]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
M
H
N
--------
V
R
I
E
I
A
D
----
I
L
--
H
F
S
L
S
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
27.37
27%
-
- C3 -
-
2OSA
-
CHIN_HUMAN
A:
[449-459]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
--------
L
I
K
N
E
D
I
----
L
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
23.15
27%
-
- C2 -
-
2XS6
-
P85B_HUMAN
A:
[201-210]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
--------
L
L
Q
E
H
L
E
----
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
18.74
13%
68
- C9 -
-
2WFG
1
?
A:
[2-251]
G
Y
V
G
I
K
I
R
L
TDVAPQA
Q
E
L
F
K
K
E
SLDVKENKVYL
V
A
A
T
LRPETMYGQT
C
C
F
V
S
PK
I
D
Y
G
VFDAGNG
D
Y
F
I
T
T
E
R
A
F
K
N
M
S
F
Q
NLTPKRG
Y
Y
K
P
L
F
T
I
N
GKTLIG
S
R
I
D
A
P
YAVNKN
L
R
V
L
P
M
ETVLATKGTG
V
V
T
C
V
PSDS
P
D
D
F
V
T
T
R
D
L
A
N
K
P
EYYGIEKDWVQTDIVPIVHTEKYGDK
C
A
E
F
L
V
N
D
L
K
I
Q
-------
S
P
---
K
D
S
V
Q
--------
L
A
N
A
K
E
L
----
A
Y
K
E
G
F
Y
N
G
T
M
L
I
G
K
YKGDKVEDA
K
P
K
V
K
Q
D
L
I
D
E
GL
A
F
V
Y
N
E----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------