@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3XWM7: (2017-12-31 )
MGAITIVAVYQAFLKYPDYGTKLLSLTHNQTAYSPTLILSTLTAGAKSATYFFHKTTSMLKRKKQRKQLLVVVAAMIIIYFLPVITQVFHQYFG
Atome Classification :
(16 SA)
------------------------------------------------------------------------------------------------------......-----------...10...---.....20........30.....-...-40....-------....50....---..----..60........70.....---...80........90-...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------MG
A
I
T
I
-----------
V
A
V
Y
Q
A
F
L---KYPDYG
T
K
L
L
S
L
THNQTAYS
P
T
-
L
I
L
-
S
T
L
TAG-------AK
S
A
T
Y
F
F
H
K
---
T
T
----
S
M
L
K
R
K
K
Q
R
K
Q
L
L
V
V
V
A
A
M
---
I
I
I
Y
F
L
P
V
I
T
Q
V
F
H
Q
-YFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
67.17
12%
-
- C2 -
-
3V3T
-
?
A:
[1-306]
----------------------------------------------------------------------------------------MKNK
I
V
F
A
P
I
G
Q
G
G
G
N
I
V
D
T
-----------
L
L
G
I
C
G
D
Y
---
N
A
L
F
I
N
T
S
K
K
D
L
D
S
L
K
H
A
K
H
T
Y
-
H
I
P
-
K
E
R
K
K
A
-------
V
G
Y
A
Q
T
Y
Y
K
Q
---
I
I
----
A
Q
I
M
E
K
F
S
S
C
D
I
V
I
F
V
A
T
M
AG
G
A
G
S
G
I
T
P
P
I
L
G
L
A
K
Q
-
M
Y
P
N
K
H
F
G
F
V
G
V
L
P
K
ATED
I
D
E
H
M
N
A
I
A
C
W
N
D
I
M
R
S
T
N
EGKD
I
S
I
YLLDNNKREK
E
S
D
I
N
K
E
F
A
T
L
F
N
D
F
M
N
MSESHAEGVVD
E
D
E
I
S
K
L
L
T
MK
K
S
N
V
I
L
E
F
D
DKED
I
Q
V
A
L
A
K
S
L
K
E
SIFAEYTTNTCE
F
M
G
I
S
T
TRVVD
V
E
A
I
K
S
I
V
G
Y
P
R
R
T
F
K
G
Y
N
S
K
K
N
I
V
V
A
T
GIEPQ
K
T
T
V
Q
M
M
N
E
I
I
E
D
K
M
K
Q
R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
64.28
24%
-11
- C2 -
-
5DIL
-
?
A:
[1-137]
-------------------------------------------------------------------------HPI
E
V
V
L
R
DMN
N
K
D
A
R
Q
K
I
K
D
E
V
N
T
Q
K
E
G
K
F
R
L
T
I
K
RDIRNVL
S
L
R
V
L
V
N
G
T
F
L
---
K
H
P
N
-
G
D
K
S
L
S
T
L
H
R
L
N
A
Y
D
Q
N
G
G
L
V
-
A
K
L
V
A
T
D
D
L
T
VED
E
K
D
G
H
R
I
L
N
S
---
L
F
----
E
R
F
D
E
G
H
S
K
P
----
I
R
A
A
E
---
T
A
V
G
V
L
S
Q
F
G
Q
E
H
R
L
-
S
P
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
58.15
18%
-117
- C2 -
-
1J7R
-
CAVP_BRALA
A:
[8-84]
------------------------------------------------------------------------------------------------------
L
G
P
E
E
K
-----------
D
E
C
M
K
I
F
D
---
I
F
-
D
R
N
A
E
------
N
I
A
P
V
S
D
T
-
M
D
M
-
L
T
K
L
G
Q
-----------
T
Y
T
K
R
E
---
T
E
----
A
I
M
K
E
A
R
G
P
K
G
D
K
K
N
I
G
P
E
------
E
W
L
T
L
C
S
K
W
V
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
54.41
40%
-
* C3 *
-
5CSJ
-
C:
[3-38]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-------
A
M
A
A
T
Y
---
S
---
E
S
----
S
I
L
A
Q
R
R
V
R
K
L
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
50.21
20%
29
- C2 -
-
2R7R
1
RDRP_ROTSP
A:
[2-1088]
G
K
Y
N
L
I
L
S
E
Y
L
S
F
I
Y
NSV
Q
I
P
I
Y
Y
S
SN
S
E
L
E
N
R
C
I
E
F
H
S
K
C
L
E
N
S
K
N
GLSL
R
K
L
F
V
E
Y
N
DVIENATLL
S
I
L
S
YSYDKYNA
V
E
R
K
L
V
K
Y
AK
G
K
P
L
E
A
DLTVNE
L
D
Y
E
N
N
-----------
K
M
T
S
E
L
F
P
---
T
A
E
E
Y
T
D
S
L
M
D
P
A
-----------
I
L
-
T
S
L
S
S
N
-------
L
N
A
V
M
F
W
L
E
K
---
H
E
NDVA
E
K
L
K
V
Y
K
R
R
L
D
L
F
T
I
V
A
S
T
---
I
N
K
Y
G
V
P
R
H
N
A
K
Y
R
Y
-
E
Y
D
VMKDKPYY
L
V
T
W
A
N
S
S
I
E
M
L
M
S
VFS
H
D
D
Y
L
I
A
K
E
L
I
V
L
S
Y
S
NRST
L
A
K
L
V
S
SP
M
S
I
L
V
A
L
VDIN
G
T
F
I
T
N
EEL
E
L
E
F
S
N
K
Y
V
R
A
I
V
P
D
Q
T
F
D
E
L
N
Q
M
L
D
N
M
R
K
A
GLV
D
I
P
K
M
I
Q
D
W
L
V
D
RSIEKF
P
L
M
A
K
I
Y
S
W
S
F
H
VGFRKQK
M
L
D
A
A
L
D
QEMY
R
E
Y
T
M
L
I
R
D
E
V
V
K
M
L
E
E
P
V
K
H
DD
H
L
L
R
D
S
E
L
A
G
L
L
S
MSSASNGES
R
Q
L
K
F
GR
K
T
I
F
S
TK
K
N
M
H
V
M
D
D
M
A
N
ERYTPG
I
I
P
P
VNVD
K
P
I
P
L
G
R
R
D
V
P
GR
R
T
R
I
I
F
ILPY
E
Y
F
I
A
Q
H
A
V
V
E
K
M
L
I
Y
A
K
H
TREYAEFYSQSN
Q
L
L
S
Y
G
D
V
T
RFLSNN
T
M
V
L
Y
T
D
V
S
Q
W
D
S
SQHNTQP
F
R
K
G
I
I
M
G
L
D
I
L
A
N
M
TND
A
K
V
L
Q
T
L
N
L
Y
K
Q
T
Q
I
N
L
M
D
S
Y
V
Q
I
P
DGN
V
I
K
K
I
Q
Y
G
A
V
A
S
GEKQ
T
K
A
A
N
S
I
A
N
L
A
L
I
K
T
V
L
S
R
I
SNK
H
S
F
A
TK
I
I
R
V
D
GD
D
N
Y
A
V
L
Q
F
N
T
E
V
T
K
Q
M
I
Q
D
V
S
N
D
V
R
E
T
Y
A
R
M
NAK
V
K
A
L
V
S
T
V
G
I
E
I
AK
R
Y
I
A
GG
K
I
F
F
R
A
G
I
N
L
LNNEKRGQST
Q
W
D
Q
A
A
I
L
Y
S
N
Y
I
V
N
R
L
R
GFETD
R
E
F
I
L
T
K
I
M
Q
M
T
SVAITGS
L
R
L
F
P
S
ERVLTTNSTFKVFDSEDF
I
I
E
Y
G
TT
V
D
E
V
Y
I
Q
R
A
F
M
S
L
S
S
Q
K
S
G
I
A
D
E
I
A
A
S
S
T
F
K
N
Y
V
T
R
L
S
E
Q
L
LFSKN
N
I
V
S
R
G
I
A
L
T
E
K
A
K
L
N
SY
A
P
I
S
L
E
K
R
R
A
Q
I
S
A
L
L
T
M
L
Q
K
P
V
T
F
KSSKIT
I
N
D
I
L
R
D
I
KPF
F
T
V
S
D
A
H
L
P
IQYQKFMPTLP
D
N
V
Q
Y
I
I
Q
C
IGSRTYQIEDDGSKS
A
I
S
R
L
I
S
K
Y
SV
Y
K
P
S
I
E
E
L
Y
K
V
I
S
LH
E
N
E
I
Q
L
Y
L
I
S
L
GIP
K
I
D
A
D
T
Y
V
GS
K
I
Y
S
R
D
K
Y
R
I
L
E
S
Y
V
Y
N
L
L
SINYGCYQLFDFNS
P
D
L
E
K
L
I
R
I
P
F
KGKI
P
A
V
T
F
I
L
H
L
Y
A
K
L
E
V
I
N
Y
A
I
K
NG
S
W
I
S
L
F
C
NYP
K
S
E
M
I
K
L
W
K
K
M
W
N
I
T
S
L
R
S
P
Y
T
N
A
N
F
F
Q
E
19
Fugue
46.56
14%
-20
- C2 -
-
5SVA
-
MED4_YEAST
T:
[37-127]
---------------------------------------------------------------------------------------------------------
L
S
K
-----------
V
Q
L
Y
E
D
L
C
---
R
Y
E
D
T
L
S
K
L
---
V
E
S
V
D
R
F
K
P
N
-
L
D
I
-
A
K
D
L
I
R
-------
T
D
E
A
L
F
E
N
V
K
L
L
A
E
Y
----
D
N
I
Y
R
N
L
Q
K
I
D
K
D
S
E
E
L
D
S
---
K
T
R
K
I
L
E
I
L
N
E
C
H
D
E
-
L
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
45.83
34%
-116
- C3 -
-
1A5Z
2
LDH_THEMA
A:
[99-136]
---------------------------------------------------------------------------------------------------------------------------------------------
I
A
R
N
V
S
K
Y
A
P
D
-
S
I
V
-
I
V
V
T
N
P
-------
V
D
V
L
T
Y
F
F
L
K
---
E
S
----
G
M
D
P
R
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
40.06
27%
-172
- C3 -
-
2LLV
-
STI1_YEAST
A:
[152-173]
---------------------------------------------------------------------------------------------------------------------------
S
E
M
M
---
K
D
P
Q
L
V
A
K
L
I
G
Y
K
Q
N
P
Q
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
37.77
31%
-115
- C3 -
-
4P6V
-
NQRA_VIBCH
A:
[245-316]
---------------------------------------------------------------------------------------------------------
Q
D
V
-----------
I
A
V
G
Q
L
F
L
---
T
G
E
L
Y
T
Q
R
V
V
S
L
A
G
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
37.62
14%
-278
- C3 -
-
2VR0
-
?
F:
[14-28]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
V
L
G
G
A
T
L
---
G
V
V
A
L
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
35.00
14%
-220
- C3 -
-
2J7A
-
?
F:
[14-28]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
V
L
G
G
A
T
L
---
G
V
V
A
L
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
30.50
47%
55
- C3 -
-
5B4S
-
?
B:
[40-59]
-----------------------------------------------------------------------------------------------------------
T
-----------
V
N
Q
W
Q
A
V
L
S
M
D
A
Y
P
E
N
G
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
30.35
47%
55
- C3 -
-
5B4S
-
?
A:
[40-59]
-----------------------------------------------------------------------------------------------------------
T
-----------
V
N
Q
W
Q
A
V
L
S
M
D
A
Y
P
E
N
G
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
26.70
29%
-
- C1 -
-
2RDD
-
YAJC_ECOLI
B:
[23-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Q
Q
K
R
T
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
26.24
13%
-7
- C2 -
-
2Q2F
1
SELS_HUMAN
A:
[18-88]
-------------------------------------------------------------------------------------------------------
G
S
A
R
L
-----------
R
A
L
R
Q
R
Q
L
---
D
R
A
A
A
A
V
E
P
D
V
V
V
K
R
Q
E
A
L
A
A
A
-
R
L
K
M
Q
---
E
E
-------
L
N
A
Q
V
E
K
H
K
E
---
K
L
----
K
Q
L
E
E
E
K
R
R
Q
K
I
------------------------
E
M
W
D
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
23.95
18%
92
* C2 *
-
1EHK
2
COXA_THET8
C:
[1-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
K
P
K
G
A
L
A
V
I
L
V
L
T
L
T
---
I
L
V
F
W
L
G
V
Y
A
V
F
F
A
R
-
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------