@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3XX33: (2018-01-02 )
MIKGTFKRNDAGQIVSFTLTGHADAGPYGSDIVCAGVSALAISTVNGIASLAGFEPIVEMNEEEGGYLYTEVTSGMTQEQNNIAEILLENLLLGLQSIEAENSEYIQIKTINDK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-....10........20........30-.....-------....40........50.....-...60.---.......70........-----80.----.....----------..---90........100.....--..110..-----------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIKGT-FKRNDAG
Q
I
V
S
F
T
L
TGHADAGPYGS--
D
I
V
C
A
-------
G
V
S
A
L
A
I
S
T
V
N
G
I
A
S
LAGFE
P
-
I
V
E
MNE---EEG
G
Y
L
Y
T
E
VTSGMTQE-----Q
N
N
----
I
A
E
I
L
----------
L
E
---
N
L
L
L
G
L
Q
S
IEAENS
E
Y
I
Q
--
I
K
TINDK-----------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
89.01
40%
-147
- C7 -
-
2IDL
1
?
A:
[4-115]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Q
A
V
-
F
E
R
A
E
D
G
E
L
R
S
A
E
I
T
G
H
A
E
S
G
E
Y
G
L
--
D
V
V
C
A
-------
S
V
S
T
L
A
I
N
F
I
N
S
I
E
K
F
A
G
Y
E
P
-
I
L
E
L
N
E
---
D
E
G
G
Y
L
M
V
E
I
P
K
D
L
P
S
H
-----
Q
R
E
----
M
T
Q
L
F
----------
F
E
---
S
F
F
L
G
M
A
N
L
S
E
N
Y
S
E
F
V
Q
--
T
R
V
I
T
-------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
84.27
38%
-59
- C7 -
-
2IDL
-
?
B:
[4-116]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Q
A
V
-
F
E
R
A
E
D
G
E
L
R
S
A
E
I
T
G
H
A
E
S
G
E
Y
G
L
--
D
V
V
C
A
-------
S
V
S
T
L
A
I
N
F
I
N
S
I
E
K
F
A
G
Y
-
E
P
I
L
E
L
N
E
D--
E
G
-
G
Y
L
M
V
E
I
P
K
D
L
P
S
H
-----
Q
R
E
----
M
T
Q
L
F
----------
F
E
---
S
F
F
L
G
M
A
N
L
S
E
N
Y
S
E
F
V
Q
--
T
R
V
I
T
E
------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
83.32
38%
-61
- C7 -
-
2IDL
1
?
A:
[4-115]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Q
A
V
-
F
E
R
A
E
D
G
E
L
R
S
A
E
I
T
G
H
A
E
S
G
E
Y
G
L
--
D
V
V
C
A
-------
S
V
S
T
L
A
I
N
F
I
N
S
I
E
K
F
A
G
Y
-
E
P
I
L
E
L
N
E
D--
E
G
-
G
Y
L
M
V
E
I
P
K
D
L
P
S
H
-----
Q
R
E
----
M
T
Q
L
F
----------
F
E
---
S
F
F
L
G
M
A
N
L
S
E
N
Y
S
E
F
V
Q
--
T
R
V
I
T
-------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
76.77
36%
-148
- C7 -
-
2G0J
-
?
A:
[1-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Q
A
T
-
F
I
R
R
K
-
G
I
L
E
S
V
E
L
T
G
H
A
G
S
G
E
Y
G
F
--
D
I
V
C
A
-------
A
V
S
T
L
S
M
N
L
V
N
A
L
E
V
L
A
D
C
T
V
-
S
L
Q
M
D
E
---
F
D
G
G
Y
M
K
I
D
L
-
S
Y
I
T
N
K
-----
S
D
E
----
K
V
Q
L
L
----------
F
E
---
A
F
L
L
G
I
T
N
L
A
E
N
S
P
E
F
V
T
--
A
K
I
M
--------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
75.46
36%
-139
- C7 -
-
2G0I
2
?
A:
[36-141]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
A
T
-
F
I
R
R
K
-
G
I
L
E
S
V
E
L
T
G
H
A
-
S
G
E
Y
G
F
--
D
I
V
C
A
-------
A
V
S
T
L
S
M
N
L
V
N
A
L
E
V
L
A
D
C
T
V
-
S
L
Q
M
D
E
---
F
D
G
G
Y
M
K
I
D
L
-
S
Y
I
T
N
K
-----
S
D
E
----
K
V
Q
L
L
----------
F
E
---
A
F
L
L
G
I
T
N
L
A
E
N
S
P
E
F
V
T
--
A
K
----------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
73.74
36%
-81
- C7 -
-
2G0I
2
?
A:
[35-144]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Q
A
T
-
F
I
R
R
-
K
G
I
L
E
S
V
E
L
T
G
H
A
-
S
G
E
Y
G
F
--
D
I
V
C
A
-------
A
V
S
T
L
S
M
N
L
V
N
A
L
E
V
L
A
D
C
-
T
--
V
S
L
Q
M
D
EF
D
G
-
G
Y
M
K
I
D
L
S
Y
-
I
T
N
K
-----
S
D
E
----
K
V
Q
L
L
----------
F
E
---
A
F
L
L
G
I
T
N
L
A
E
N
S
P
E
F
V
T
--
A
K
I
M
T
-------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
72.97
36%
-88
* C7 *
-
2G0J
-
?
C:
[1-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Q
A
T
-
F
I
R
R
-
K
G
I
L
E
S
V
E
L
T
G
H
A
G
S
G
E
Y
G
F
--
D
I
V
C
A
-------
A
V
S
T
L
S
M
N
L
V
N
A
L
E
V
L
A
D
C
-
T
--
V
S
L
Q
M
D
EF
D
G
-
G
Y
M
K
I
D
L
S
Y
-
I
T
N
K
-----
S
D
E
----
K
V
Q
L
L
----------
F
E
---
A
F
L
L
G
I
T
N
L
A
E
N
S
P
E
F
V
T
--
A
K
I
M
T
-------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
62.88
29%
-131
- C7 -
-
1S12
-
?
A:
[1-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
K
V
T
-
V
T
N
S
------
F
F
E
V
T
G
H
A
P
-----
D
--
K
T
L
C
A
-------
S
V
S
L
L
T
Q
H
V
A
N
F
L
K
A
----
E
K
-
K
A
K
I
K
K
---
E
S
G
---
Y
L
K
V
K
F
---
E
E
-----
L
E
N
----
C
E
V
K
V
----------
L
A
---
A
M
V
R
S
L
K
E
L
E
Q
K
F
P
S
Q
I
R
--
V
E
V
I
D
N
G
S----------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
62.86
27%
-154
- C7 -
-
1S12
-
?
B:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
K
V
T
-
V
T
N
------
S
F
F
E
V
T
G
H
A
P
D
-------
K
T
L
C
A
-------
S
V
S
L
L
T
Q
H
V
A
N
F
L
K
A
E
K
K
A
-
K
----
I
K
K
---
E
S
-
G
Y
L
K
V
K
F
E
E
----------
L
E
N
----
C
E
V
K
V
----------
L
A
---
A
M
V
R
S
L
K
E
L
E
Q
K
F
P
S
Q
I
R
--
V
E
V
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
62.83
27%
-169
- C7 -
-
1S12
-
?
D:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
K
V
T
-
V
T
N
------
S
F
F
E
V
T
G
H
A
P
D
-------
K
T
L
C
A
-------
S
V
S
L
L
T
Q
H
V
A
N
F
L
K
A
E
K
K
A
-
K
----
I
K
K
---
E
S
-
G
Y
L
K
V
K
F
E
E
----------
L
E
N
----
C
E
V
K
V
----------
L
A
---
A
M
V
R
S
L
K
E
L
E
Q
K
F
P
S
Q
I
R
--
V
E
V
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
55.90
35%
-
- C- -
-
4PEO
-
?
B:
[1-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
V
D
-
I
T
V
N
D
E
G
K
V
T
D
V
I
M
D
G
H
A
---------------------
G
A
S
A
V
L
F
G
S
V
N
A
I
I
G
L
T
S
E
-
R
P
D
I
N
Y
D
D
---
N
G
-
G
H
F
H
I
R
S
V
D
----
T
-----
N
N
D
----
E
A
Q
L
I
----------
L
Q
---
T
M
L
V
S
L
Q
T
I
E
E
E
Y
N
-
N
I
R
--
L
N
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
53.19
34%
-
- C- -
-
4PEO
-
?
A:
[1-104]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
V
D
-
I
T
V
N
D
E
G
K
V
T
D
V
I
M
D
G
---------------
A
-------
G
A
S
A
V
L
F
G
S
V
N
A
I
I
G
L
T
S
E
R
P
-
D
I
N
Y
D
D
---
N
G
G
H
F
H
I
R
S
V
D
T
----------
N
N
D
----
E
A
Q
L
I
----------
L
Q
---
T
M
L
V
S
L
Q
T
I
E
E
E
Y
N
-
N
I
R
--
L
N
----------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
43.86
19%
-
- C3 -
-
4Q58
-
ITB4_HUMAN (first)
D:
[1127-1320]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGAPQN
P
N
A
K
A
AGSR
K
I
H
F
N
W
L
P
P
S
G
KPM
G
Y
R
V
K
Y
W
I
QGDSESE
A
H
L
L
D
S
KVP
S
V
E
L
T
-
N
L
Y
P
Y
C
D
Y
E
M
K
V
C
A
Y
G
A
Q
G
E
G
P
Y
S
S
--
L
V
S
C
R
T
H
Q
E
VPS
E
P
G
R
L
A
F
N
V
V
S
S
T
V
T
Q
L
S
W
A
E
-
P
A
E
T
N
------
G
E
I
T
A
Y
E
V
C
Y
G
L
V
N
D
-----
D
N
R
PI
G
P
M
K
K
V
L
----------
V
D
NPK
N
R
M
L
L
I
E
N
L
R
E
S
Q
P
Y
R
Y
T
--
V
K
A
R
N
G
A
G
W
G
P
E
R
E
A
I
I
N
LATQP-------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
42.87
26%
-321
- C7 -
-
5LNF
1
A:
[27-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
Y
P
S
L
K
E
I
T
E
K
Y
P
E
W
L
Q
--
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
37.42
16%
-7
- C7 -
-
2QSW
1
A:
[11-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
V
E
E
M
L
E
Q
Y
P
N
G
K
I
V
R
L
L
F
H
G
E
Q
A
K
L
P
-------------------
I
I
S
H
I
V
Q
E
Y
Q
V
E
V
S
I
I
Q
G
N
-
I
Q
Q
T
K
Q
---
G
A
V
G
S
L
Y
I
Q
L
L
-
G
E
E
Q
N
-----
I
L
A
----
A
I
E
G
L
----------
R
K
---
L
--------------
R
V
E
--
T
E
V
I
G
N
E
-----------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
35.64
19%
-143
- C4 -
-
2CME
1
ORF9B_CVHSA
A:
[1-78]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
P
A
L
H
L
V
D
P
Q
I
Q
L
T
I
T
A
D
P
K
V
Y
--
P
I
I
L
R
-------
L
G
S
N
L
S
L
S
M
A
R
R
N
L
D
-----------
S
L
---
E
A
R
A
F
Q
S
T
P
I
V
V
Q
M
T
K
--------------------------------------
L
A
T
T
E
E
L
P
D
E
F
V
V
--
V
T
A
K
--------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
31.08
23%
64
- C6 -
-
5SVD
-
NOP9_YEAST
A:
[5-589]
QMFF
G
V
L
D
R
E
E
L
E
Y
F
K
Q
A
E
S
T
L
Q
L
DAFEA
P
E
E
K
F
Q
F
V
T
S
I
I
E
E
A
KGK
E
L
K
L
V
T
SQIT
S
K
L
M
E
R
V
I
L
E
CD
E
T
Q
L
K
D
I
F
Q
S
F
NGV
F
F
G
L
S
C
H
K
Y
A
S
H
V
L
E
T
L
F
V
R
S
A
A
L
V
E
R
E
L
L
TYVT
M
E
N
M
F
L
F
M
L
N
E
L
K
PH
L
K
T
M
M
N
H
Q
Y
A
S
H
V
L
R
L
L
I
L
I
L
S
SKTLPV
Y
Q
T
P
E
S
F
K
S
E
L
R
D
I
I
T
T
L
Y
K
G
F
T
NGAESRSDIS
Q
S
T
I
T
K
F
R
E
Y
S
V
DKVA
S
P
V
I
Q
L
I
I
Q
V
EGIFDRDR
S
F
W
R
L
V
F
NTADEKD
P
K
E
E
S
F
L
E
Y
L
L
S
D
P
V
G
S
H
F
L
E
N
V
I
G
S
AR
L
K
Y
V
E
R
L
Y
R
L
YMKD
R
I
V
K
L
-
A
K
R
D
T
T
G
A
F
V
V
R
A
L
L
E
H
L
K
E
K
D
V
K
Q
I
L
D
A
V
V
P
-------
E
L
S
M
L
L
N
S
------
N
M
D
F
G
T
A
-
I
I
N
T
S
N
---
K
Q
G
G
Y
L
R
D
D
V
I
A
Q
L
I
Q
K
YYPE-
K
S
D
----
A
K
N
I
L
----------
E
S
---
C
L
L
L
S
A
S
T
L
G
N
T
R
D
D
W
-----
P
T
A
E
E
R
R
R
S
V
F
L
E
Q
L
I
D
Y
D
D
K
F
L
N
I
T
I
D
S
M
L
A
LP
E
E
R
L
I
Q
M
C
Y
HGV
F
S
H
V
V
E
H
V
LQTTRVD
I
I
K
R
K
M
L
L
N
I
L
S
K
E
S
V
N
L
A
C
N
V
Y
G
S
H
I
M
D
K
L
W
E
F
T
AKL
T
L
Y
K
E
R
I
A
R
A
L
V
L
E
T
E
K
V
K
N
S
I
Y
G
R
Q
V
W
K
N
W
K
L
E
L
Y
V
RK
M
W
D
W
K
K
L
I
K
E
Q
E
F
E
I
F
P
10
PsiBlast_PDB
28.42
35%
3
- C9 -
-
1OBR
-
CBPT_THEVU
A:
[197-236]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
T
L
I
T
F
H
T
-
Y
S
E
L
I
L
---
Y
P
Y
G
Y
T
Y
T
D
V
P
S
D
M
T
Q
D
-----
D
F
N
----
V
F
K
T
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
28.34
26%
28
- C2 -
-
1DAA
1
DAAA_BACYM
A:
[76-148]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
E
K
N
E
---
L
N
T
G
H
I
Y
F
Q
V
T
R
G
T
S
P
R
AHQFP
E
N
T
----
V
K
P
V
I
I
G
Y
T
K
E
N
P
R
P
L
E
---
N
L
E
K
G
V
K
A
T
F
V
E
D
I
R
W
L
R
CD
I
K
S
L
N
-------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
26.92
35%
-4
- C9 -
-
4F8Z
4
CBPT_THEVU
A:
[197-236]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
T
L
I
T
F
H
T
-
Y
S
E
L
I
L
---
Y
P
Y
G
Y
T
Y
T
D
V
P
S
D
M
T
Q
D
-----
D
F
N
----
V
F
K
T
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------