@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3XX50: (2018-01-02 )
MDIITKFAEGFMRLFQTGAETFISWMTGIVPVVLMLMVAMNTLIAFLGEDRVTKVAKLSAKNPLTRYLVLPFLSAFMLGNPMSFTMARFLPEYYKPSYYAAQAQFCHTSNGVFPHINPGELFVWMGIAQGIETLGLNSMELAIRYLLVGLLMNFIGGWITDFTTGFVCRQQGIVLSKKVELSVD
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10------...--..---...20--.....-....30--------........40........50...---.....60........70..-.....-----.80-------..----......--90-....-.....100-------------...---....110.----......-------120..-....-.130...-....140.......150.-......160..-.....170.......180..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
D
I
I
T
K
F
A
E
G
F
------
M
R
L
--
F
Q
---
T
G
A
E
---
T
F
I
S
W
-
M
T
G
I
V
P
--------
V
V
L
M
L
M
V
A
M
N
T
L
I
A
F
LGE
D
R
V
T
K
---
V
A
KLSAKNP
L
T
R
Y
L
V
L
P
F
L
-
S
A
F
ML-----GN
P
-------
M
S
----
F
T
M
A
R
F
--
L
--
P
E
Y
Y-KPSY
Y
A
A
Q
-------------
A
Q
F
---
C
HTSNGVF----PHINPG-------
E
L
F
V
W
-
M
G
I
A-Q
G
I
E
T
LG-L
N
S
M
E
L
A
I
R
Y
L
L
V
G
L
L
M
N
-
F
I
G
G
W
I
T
DFTT-G
F
V
C
RQQ
G
I
V
L
S
K
K
V
E
L
SVD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
71.25
12%
-92
- C2 -
-
3T5X
-
PCID2_HUMAN
A:
[205-399]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
T
A
Q
R
V
T
Y
K
Y
Y
V
G
R
------
K
A
M
--
F
D
SD
F
K
Q
A
E
---
E
Y
L
S
F
-
A
F
E
H
C
H
RSS
Q
K
N
K
R
M
I
L
I
Y
L
L
P
V
K
M
L
L
G
H
M
P
T
V
E
L
L
K
K
Y
H
L
M
Q
F
A
E
V
T
R
A
V
S
E
G
N
L
L
L
L
-
H
E
A
L
A
-----
K
H
E
-------
A
F
----
F
I
R
C
G
I
--
F
--
L
I
L
E
-
K
L
K
I
I
T
Y
R
-------------
N
L
F
---
K
K
V
Y
L
L
L
K
----
T
H
Q
L
S
L
-------
D
A
F
L
V
-
A
L
K
F
-
M
Q
V
E
D
V
D
-
I
D
E
V
Q
C
I
L
A
N
L
I
Y
M
---
G
-
H
V
K
G
Y
I
S
H
Q
H
Q
-
K
L
V
V
S
K
Q
N
P
F
P
P
L
S
T
V
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
70.42
19%
-111
- C2 -
-
4O6Y
2
ACFR2_ARATH
A:
[10-219]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
I
F
M
V
V
R
V
L
G
F
I
I
A
A
L
V
L
T
W
------
T
V
H
--
Y
R
---
G
G
L
A
LSS
D
N
K
D
H
-
I
F
N
V
H
P
--------
V
M
M
V
I
G
L
I
L
F
N
G
E
A
M
L
A
Y
K
S
V
Q
G
---
T
K
N
L
K
K
L
V
H
L
T
L
Q
L
T
A
F
I
L
-
S
L
I
G
V
-----
W
A
A
-------
L
K
----
F
H
I
D
K
G
--
I
--
E
N
F
Y
S
L
H
S
W
L
G
L
A
-------------
C
L
F
L
F
A
F
Q
W
A
A
G
F
V
----
T
Y
W
Y
P
G
GS
R
N
S
R
A
S
L
M
P
W
H
V
F
L
G
-
I
S
I
Y
A
L
A
-
L
V
T
A
T
T
G
I
L
E
K
V
T
F
L
Q
V
N
Q
V
I
T
R
Y
S
T
E
A
M
L
-
V
N
T
M
G
V
L
I
L
I
L
G
G
F
V
I
L
G
V
V
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
65.05
13%
-110
- C2 -
-
4ACK
3
?
A:
[1-155]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
D
F
K
E
I
E
I
I
------
L
D
I
--
I
K
---
T
T
R
E
---
I
-----
I
E
N
D
N
E
--------
K
I
S
Y
H
R
N
N
I
R
K
S
I
F
F
L
Q
E
E
L
L
E
K
---
Y
S
--
E
T
V
C
K
Y
I
V
F
P
L
L
A
Y
V
-
D
E
K
L
M
-----
L
L
R
-------
E
K
SA
S
N
I
S
W
S
L
L
--
Q
--
L
E
Y
Y
-
D
R
K
D
--------------------------------------
G
G
E
-------
Y
V
F
E
I
-
T
D
N
I
-
L
S
E
N
I
Y
P
-
Q
I
C
Y
Q
T
I
S
L
I
L
H
N
D
-----
F
Y
G
K
Y
Y
D
N
--------
I
Y
N
H
S
F
L
A
Y
K
K
E
I
D
K
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
59.32
15%
-29
- C2 -
-
2VQ2
1
?
A:
[4-223]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AN
Q
V
S
N
I
K
T
Q
L
A
M
E
Y
------
M
R
G
QD
Y
R
---
Q
A
T
A
---
S
I
E
D
A
-
L
K
S
D
P
K
--------
N
E
L
A
W
L
V
R
A
E
I
Y
Q
Y
L
K
V
N
D
K
A
Q
E
---
S
F
R
Q
A
L
S
I
K
P
D
S
A
E
I
N
N
N
Y
-
G
W
F
L
C
-----
G
R
L
NR
P
A
E
S
M
A
Y
----
F
D
K
A
L
A
--
D
--
P
T
Y
P
-
T
P
Y
I
A
N
L
N
-------------
K
G
I
---
C
S
A
K
Q
G
-------
Q
F
G
L
A
-------
E
A
Y
L
K
-
R
S
L
A
-
A
Q
P
Q
-
F
P
-
P
A
F
K
E
L
A
R
T
K
M
L
A
G
Q
L
G
D
-
A
D
Y
Y
F
K
K
Y
Q
S
R
-
V
E
V
L
Q
A
D
D
L
L
L
G
W
K
I
A
K
A
L
G
N
A
Q
A
A
Y
E
Y
E
A
Q
L
Q
A
NFPYS
E
E
L
Q
T
V
L
T-----------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
57.72
14%
-40
- C2 -
-
5CXI
1
KSTR_MYCTU
A:
[18-198]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
R
E
R
R
K
R
I
L
D
A
T
M
A
I
A
S
K
G
GYEAVQ
M
R
A
--
V
A
---
D
R
A
D
---
V
A
V
G
T
-
L
Y
R
Y
F
P
--------
S
K
V
H
L
L
V
S
A
L
G
R
E
F
S
R
I
D
A
K
T
D
R
---
S
A
A
G
A
T
P
F
Q
R
L
N
F
M
V
G
K
L
N
-
R
A
M
Q
R
-----
N
P
L
-------
L
T
----
E
A
M
T
R
A
--
Y
--
V
F
A
D
-
A
S
A
A
S
E
V
D
-------------
Q
V
E
---
K
L
I
D
S
M
F
A
----
R
A
M
A
N
G
-------
E
P
------------------
T
E
D
Q
Y
H
I
A
R
V
I
S
D
V
W
L
S
-
N
L
L
A
W
L
T
R
--------
R
A
S
A
T
D
V
S
K
R
L
D
L
A
V
R
L
L
IG----------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
56.52
10%
-53
* C3 *
-
4PX7
2
?
A:
[1-258]
----------------------------------------------------------------------------------------------------------------------------------------------GR
S
I
A
R
R
T
A
V
G
A
A
L
L
L
V
M
P
V
A
V
W
I
SG
W
R
W
Q
P
GSW
L
L
K
A
A
F
W
V
T
E
T
V
T
Q
P
W
------
G
V
I
--
T
H
---
L
I
L
F
---
G
W
F
L
W
C
L
R
F
R
I
K
--------
A
A
F
V
L
F
A
I
L
A
A
A
I
L
V
G
Q
G
V
K
S
W
I
---
K
D
K
V
Q
E
P
R
P
F
V
I
W
L
E
K
T
H
H
M
P
V
D
K
F
Y
T
LKR
A
E
R
-------
G
N
----
L
V
K
E
Q
L
--
A
--
E
P
Q
Y
-
L
R
S
H
W
Q
K
E
TGFAFPS
G
H
T
M
F
A
A
S
W
---
A
L
L
A
V
G
L
L
WPRR
R
T
L
T
I
A
-------
I
L
L
V
W
-
A
T
G
V
M
G
S
R
L
L
L
G
M
H
W
P
R
D
L
V
V
A
T
L
I
S
W
A
L
V
A
-
V
A
T
W
L
A
Q
R
I
C
G
-
P
L
T
P
P
E
E
N
R
E
I
A
Q
R
E
Q
E
S
L
E
HH------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
53.32
26%
-1
- C2 -
-
5J90
5
?
A:
[27-508]
NHI
K
G
G
F
A
P
M
F
N
N
IQVLTP
E
W
V
Y
Q
L
Q
QGLN
S
D
I
W
S
GYMATPTGFESGVNNTTYALL
D
N
W
N
G
F
I
W
D
Y
G
Y
K
NV
M
F
N
A
Y
D
I
A
N
K
S
KGKY
D
Q
F
Y
A
L
S
L
I
L
K
V
E
G
M
H
R
M
T
D
T
FGPIIYSKFGSNDATI
A
Y
D
S
Q
E
E
V
Y
T
Q
M
F
A
E
L
D
T
A
V
A
E
L
T
K
R
I
D
A
GEASTFESTDMTGYKGK
Y
E
S
W
V
R
F
A
N
T
L
R
L
R
L
A
M
R
I
V
K
V
K
------
P
A
L
--
A
K
---
T
E
A
E
---
K
A
V
A
Q
-
K
F
G
V
M
L
--------
V
----------------
N
D
D
S
F
K
---
I
V
S
P
V
Y
T
N
P
------
I
A
T
I
-
S
S
S
W
L
-----
D
I
R
-------
M
S
----
A
D
M
E
S
I
--
M
--
K
G
Y
Q
-
D
P
R
----
I
-------------
A
S
Y
---
F
D
T
S
K
Q
---------
F
P
N
-------
E
---
Y
-
K
G
V
R
-
T
G
I
A
I
S
G
-
K
S
D
H
Q
---------------------
D
F
S
G
I
G
A
V
V
R
S
K
E
I
Y
L
M
N
A
A
E
A
Y
F
L
R
A
E
G
A
L
R
GWNMGGT
A
Q
E
L
Y
E
A
G
I
K
A
S
F
D
Q
R
GVSG
A
A
G
Y
I
A
DNTK
T
A
A
A
Y
V
DPNFPENNSDPVNNVTVAWDAAAT
N
E
V
K
L
Q
K
I
I
T
Q
K
W
I
A
G
FPE
G
Q
E
A
W
S
D
Y
R
R
TGYP
K
L
F
P
V
LKNYSGGAITTEFGVRRINFV
Q
S
E
K
A
GN
S
G
G
V
A
T
G
V
S
K
L
GGPDNGGTRVWWDVNAPNF
8
PsiBlast_PDB
52.94
42%
-136
- C4 -
-
3H1I
-
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
47.64
42%
-93
- C4 -
-
3L71
2
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
47.16
42%
-93
- C4 -
-
3L74
1
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
46.85
27%
-145
* C2 *
-
5DWA
1
T2A1_THAGE
B:
[44-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
A
I
-------------
G
Q
A
---
F
V
M
A
T
E
V
C
----
P
D
A
N
P
S
-------
D
L
W
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
46.59
42%
-111
- C4 -
-
4U3F
2
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
46.55
42%
-87
- C4 -
-
3H1K
1
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
46.28
19%
-23
- C2 -
-
5IP0
-
?
A:
[3-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
V
I
K
S
F
T
E
Q
M
------
Q
G
---
F
A
---
A
P
L
T
---
R
Y
N
Q
L
-
L
A
S
N
I
E
--------
Q
L
T
R
L
Q
L
A
S
A
N
A
Y
A
E
L
G
L
N
Q
L
Q
A
---
V
S
K
V
Q
D
T
Q
S
L
A
A
L
G
T
V
Q
L
E
-
T
A
S
Q
L
-----
S
R
Q
-------
M
L
----
D
D
I
Q
K
L
S
A
L
--
G
Q
Q
F
-
K
E
E
L
D
V
L
T
-------------
A
D
G
---
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
45.97
42%
-90
- C4 -
-
3L73
2
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
45.68
42%
-98
* C4 *
-
3L75
1
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
45.31
42%
-85
- C4 -
-
3L70
2
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
44.47
42%
-77
- C4 -
-
3L72
2
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
43.07
42%
-73
- C4 -
-
3BCC
1
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
43.03
42%
-113
- C4 -
-
3CWB
-
CYB_CHICK
C:
[237-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
F
L
T
L
A
L
F
-
S
P
N
L
L
-----
G
D
P
-------
E
N
----
F
T
P
A
N
P
--
L
VT
P
P
H
I
-
K
P
E
W
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------