@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3XY60: (2018-01-07 )
MIVALLAGGHVLFEDIPGVGKTLLVKALAKAVQGTFSRVQCTPDLLPSDILGFSVYNSQSKEFEFRPGPIFTTILLADEINRTTPRTQSALLEAMAENHATIDNNTYPLDNHFFVLATQNPIEYEGTYPLPEAQLDRFLFRLQIGYPSFDDELLLLLDKFEKVLDNLNEVLNSYEIEEIKTNVANVFVSPEVASYALQLVSATRSHAAIQLGISPRGSLSFIQAAKAYALIHGRNYVTPKDLQDLVPYVFSHRLIFYDRSLKEDEKKQIIHTLVAQIPIPVR
Atome Classification :
(20 SA)
-----------------------------........----.10........20........30...-...-----------------------..40.......--------.50..--......60...-.....70..---.......80........90........100--------.......110-........120.......130.......140.......150-.....-..160-.--.....------.--170.......180.......190.....--..200-----------......---------...210--------......----..220.....--------..230.......240..-.....250....-...260-.......270.......280---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------
M
I
V
A
L
LAG----
G
H
V
L
FEDIPGV
G
K
T
L
L
V
K
A
L
A
K
A
V
Q
G
-
T
FS-----------------------R
V
Q
CTPDLL
P
S
--------
D
IL
G
F
--
S
VYNSQSK
E
F
E-FRPG
P
I
-
F
T
---
T
I
L
L
ADEINRTTPR
T
Q
S
A
L
L
E
A
M
A
ENHATI--------DNNTYPLD
N
--
H
F
F
V
L
A
TQNPIEYEGTYPL
P
E
A
Q
L
D
R
F
L
F
R
L
QIGYPSF
D
D
E
-
L
L
L
L
L
-
D
K
F
E
K
-
V
--
L
D
N
L
N
------
E
--
V
L
N
S
Y
E
I
E
E
I
K
T
N
V
A
N
V
F
VS
P
E
V
A
S
Y
A
L
--
Q
L
V
-------------
S
ATRS
H
---------
A
A
I
Q
L---------GISPRG----
S
L
S
F
I
Q
A
A
K
A
--------
Y
A
L
I
HGRNYV
T
P
K
D
L
Q
D
-
L
V
P
Y
V
FS
H
R
L
I
F
-YDRSLK-
E
D
E
K
K
Q
I
I
H
T
L
V
A
QIPIPVR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
76.00
38%
-78
- C2 -
-
2R44
11
?
A:
[39-328]
-----------------------------
L
L
I
G
I
C
T
G
----
G
H
I
L
L
E
G
V
P
G
L
A
K
T
L
S
V
N
T
L
A
K
T
M
D
L
-
D
F
H
-----------------------
R
I
Q
F
T
P
D
L
L
P
S
--------
D
L
I
G
T
--
M
I
Y
N
Q
H
K
G
N
F
E
-
V
K
K
G
P
V
-
F
S
---
N
F
I
L
A
D
E
V
N
R
S
P
A
K
V
Q
S
A
L
L
E
C
M
Q
E
K
Q
V
T
I
--------
G
D
T
T
Y
P
L
D
N
--
P
F
L
V
L
A
T
Q
N
P
V
E
Q
E
G
T
Y
P
L
P
E
A
Q
V
D
R
F
M
M
K
I
H
L
T
Y
L
D
K
E
S
E
-
L
------
E
V
M
R
-
R
--
V
S
N
M
N
FNYQVQ
K
--
I
V
S
K
N
D
V
L
E
I
R
N
E
I
N
K
V
T
I
S
E
S
L
E
K
Y
I
I
--
E
L
V
-------------
F
A
T
R
F
P
---------
A
E
Y
G
L
E
A
E
A
S
Y
IL
Y
G
A
S
T
R
A
----
A
I
N
L
N
R
V
A
K
A
--------
M
A
F
F
N
N
R
D
Y
V
L
P
E
D
I
K
E
-
V
A
Y
D
I
L
N
H
R
I
I
L
N
Y
E
A
E
A
E
-
G
I
S
T
R
Q
I
I
E
T
I
L
R
K
V
N
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
124
HHSearch
74.72
40%
-72
* C2 *
-
2R44
11
?
A:
[43-330]
---------------------------------
I
C
T
G
----
G
H
I
L
L
E
G
V
P
G
L
A
K
T
L
S
V
N
T
L
A
K
T
M
D
L
-
D
F
H
-----------------------
R
I
Q
F
T
P
D
L
L
P
S
--------
D
L
I
G
T
--
M
I
Y
N
Q
H
K
G
N
F
E
-
V
K
K
G
P
V
-
F
S
---
N
F
I
L
A
D
E
V
N
R
S
P
A
K
V
Q
S
A
L
L
E
C
M
Q
E
K
Q
V
T
I
--------
G
D
T
T
Y
P
L
D
N
--
P
F
L
V
L
A
T
Q
N
P
V
E
Q
E
G
T
Y
P
L
P
E
A
Q
V
D
R
F
M
M
K
I
H
L
T
Y
L
D
K
E
S
E
-
L
E
V
M
R
-
R
V
S
N
M
N
F
--
N
Y
Q
V
Q
------
K
--
I
V
S
K
N
D
V
L
E
I
R
N
E
I
N
K
V
T
I
S
E
S
L
E
K
Y
I
I
--
E
L
V
-------------
F
A
T
R
F
P
AEYGL
E
A
E
A
S
Y
I
L
Y
---------
G
A
S
T
R
A
----
A
I
N
L
N
R
V
A
K
A
--------
M
A
F
F
N
N
R
D
Y
V
L
P
E
D
I
K
E
-
V
A
Y
D
I
L
N
H
R
I
I
L
-
N
Y
E
A
E
A
E
G
I
S
T
R
Q
I
I
E
T
I
L
R
K
V
N
I
T
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
167
Fugue
46.14
20%
26
- C2 -
-
3NBX
1
RAVA_ECOLI
X:
[5-499]
HPHLLAERISRLSSSLEKGLYERSHAIRL
C
L
L
A
A
L
S
G
----
E
S
V
F
L
L
G
P
P
G
I
A
K
S
L
I
A
R
R
L
K
F
A
-----
F
Q
-----------------------
N
A
R
A
F
E
Y
L
M
T
R
--------
F
S
T
P
E
--
E
V
F
G
P
L
S
E
R
L
T
-
S
G
Y
L
P
E
--
A
---
E
I
V
F
L
D
E
I
W
K
A
G
P
A
I
L
N
T
L
L
T
A
I
N
E
R
Q
F
R
N
--------
G
A
H
V
E
K
I
P
M
--
R
L
L
V
A
A
S
N
E
L
P
E
A
D
S
S
L
---
E
A
L
Y
D
R
M
L
I
R
L
W
L
D
K
V
Q
D
K
A
N
-
F
R
S
M
L
T
S
Q
Q
D
E
-
N
--
D
N
P
V
P
------
D
AL
Q
V
T
D
E
E
Y
E
R
W
Q
K
E
I
G
E
I
T
L
P
D
H
V
F
E
L
I
F
--
M
L
R
-------------
Q
Q
L
D
K
L
---------
P
D
A
-
P
---------
Y
V
S
D
R
R
----
W
K
K
A
I
R
L
L
Q
A
--------
S
A
F
F
S
G
R
S
A
V
A
P
V
D
L
I
L
-
L
K
D
C
L
W
Y
D
--------
A
Q
S
-
L
N
L
I
Q
Q
Q
I
D
V
L
M
T
G
H
A
W
Q
Q
Q
GMLTRLGAIVQRHLQLQQQQSDKTALTVIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSAQHLVVRDVSLQGSTLALPGSLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQ
19
PsiBlast_PDB
45.90
50%
-200
- C3 -
-
5IFW
1
TERA_HUMAN
B:
[515-565]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
168
Fugue
45.82
18%
24
- C2 -
-
1G8P
-
BCHI_RHOCB
A:
[18-350]
---------RPVFPFSAIVGQ
E
D
M
K
L
A
L
L
L
T
A
V
D
P
G
I
----
G
G
V
L
V
F
G
D
R
G
T
G
K
S
T
A
V
R
A
L
A
A
L
L
P
E
-
I
E
A
VEGCPVSSPNVEMIPDWATVLST
N
V
I
R
K
P
T
P
V
V
D
L
P
L
GVSED
R
V
V
G
A
LD
I
E
R
A
I
S
K
G
E
K
A
-
F
E
P
G
L
L
-
A
R
A
NR
G
Y
L
Y
I
D
E
C
N
L
L
E
D
H
I
V
D
L
L
L
D
V
A
Q
S
G
E
N
V
V
--------
E
R
D
G
L
S
I
R
H
P
A
R
F
V
L
V
G
S
G
N
P
E
E
G
D
----
L
R
P
Q
L
L
D
R
F
G
L
S
V
E
V
L
S
P
R
D
V
E
T
-
R
V
E
V
I
-
R
R
R
D
T
-
Y
--
D
A
D
P
K
------
A
--
F
L
E
E
W
R
P
K
D
M
D
I
R
N
Q
I
L
E
A
R
E
R
L
P
K
V
E
A
P
N
T
A
L
-------------
Y
D
C
A
A
L
---------
C
I
A
L
G
---------
S
D
G
L
R
G
----
E
L
T
L
L
R
S
A
R
A
--------
L
A
A
L
E
G
A
T
A
V
G
R
D
H
L
K
R
-
V
A
T
M
A
L
S
H
R
L
----
R
V
A
R
T
-
V
E
E
T
L
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
84
PsiBlast_CBE
44.13
50%
-185
- C3 -
-
3CF1
2
TERA_MOUSE
C:
[514-568]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
125
HHSearch
43.98
21%
-13
- C2 -
-
3NBX
1
RAVA_ECOLI
X:
[35-290]
------------------------------
L
L
A
A
L
S
G
----
E
S
V
F
L
L
G
P
P
G
I
A
K
S
L
I
A
R
R
L
K
F
A
F
Q
N
A
R
A
F
-----------------------
E
Y
L
M
T
R
F
S
T
P
E
--------
E
V
F
G
P
--
L
S
--------
E
R
L
T
S
G
Y
L
P
E
A
---
E
I
V
F
L
D
E
I
W
K
A
G
P
A
I
L
N
T
L
L
T
A
I
N
E
R
Q
F
R
N
--------
G
A
H
V
E
K
I
P
M
--
R
L
-
L
V
A
A
S
N
E
L
P
E
A
--
D
S
S
L
E
A
L
Y
D
R
M
L
I
R
L
W
L
D
K
V
Q
D
K
A
N
F
R
S
M
L
T
-
S
Q
Q
D
E
-
N
DN
P
V
P
D
A
------
L
--
Q
V
T
D
E
E
Y
E
R
W
Q
K
E
I
G
E
I
T
L
P
D
H
V
F
E
L
I
F
--
M
L
R
-------------
Q
Q
L
D
K
L
---------
P
-
D
A
P
---------
Y
V
S
D
R
R
----
W
K
K
A
I
R
L
L
Q
A
--------
S
A
F
F
S
G
R
S
A
V
A
P
V
D
L
I
L
-
L
K
D
C
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
115
PsiBlast_CBE
43.33
55%
-178
- C3 -
-
3WHK
1
PAN_PYRFU (first)
D:
[54-97]
-------------------------------------------
V
L
L
Y
G
P
P
G
C
G
K
T
L
M
A
K
A
I
A
H
E
V
N
A
-
T
F
I
-----------------------
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
114
PsiBlast_CBE
43.05
55%
-178
- C3 -
-
3WHK
1
PAN_PYRFU (first)
E:
[54-97]
-------------------------------------------
V
L
L
Y
G
P
P
G
C
G
K
T
L
M
A
K
A
I
A
H
E
V
N
A
-
T
F
I
-----------------------
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
85
PsiBlast_CBE
42.88
50%
-171
- C3 -
-
3CF1
2
TERA_MOUSE
B:
[514-568]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
79
PsiBlast_CBE
42.79
50%
-179
- C3 -
-
3CF3
1
TERA_MOUSE
C:
[514-568]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
111
PsiBlast_CBE
42.78
55%
-178
- C3 -
-
3WHK
1
H:
[54-96]
-------------------------------------------
V
L
L
Y
G
P
P
G
C
G
K
T
L
M
A
K
A
I
A
H
E
V
N
A
-
T
F
I
-----------------------
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
42.74
50%
-179
- C3 -
-
3CF3
1
TERA_MOUSE
A:
[514-568]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
118
PsiBlast_CBE
42.58
55%
-180
- C3 -
-
3WHK
1
PAN_PYRFU (first)
A:
[54-96]
-------------------------------------------
V
L
L
Y
G
P
P
G
C
G
K
T
L
M
A
K
A
I
A
H
E
V
N
A
-
T
F
I
-----------------------
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
80
PsiBlast_CBE
42.49
50%
-179
- C3 -
-
3CF3
1
TERA_MOUSE
B:
[514-568]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
170
Fugue
42.43
21%
-16
- C1 -
-
1HQC
1
RUVB_THET8
A:
[5-318]
-------ALRPKTLDEYIGQ
E
R
L
K
Q
K
L
R
V
Y
L
E
A
A
K
A
R
KEPL
E
H
L
L
L
F
G
P
P
G
L
G
K
T
T
L
A
H
V
I
A
H
E
L
G
V
-
N
L
R
-----------------------
V
T
S
G
P
A
I
E
K
P
G
--------
D
L
A
A
I
--
L
A
N
S
L
E
E
G
D
----------------
I
L
F
I
D
E
I
H
R
L
S
R
Q
A
E
E
H
L
Y
P
A
M
E
D
F
V
M
D
I
VIGQGPA
A
R
T
I
R
L
E
L
P
R
--
F
T
L
I
G
A
T
T
R
P
G
L
I
--
T
A
P
L
L
----
S
R
F
G
I
V
E
H
L
E
Y
Y
T
-
P
E
E
-
L
A
Q
G
V
-
M
R
D
A
R
------
L
L
G
------
V
--
R
I
T
E
E
A
A
L
E
I
G
R
R
S
R
G
---
T
M
R
V
A
K
R
L
F
--
R
R
V
R
D
F
AQVAGEEVIT
R
E
R
A
L
E
---------
A
L
A
A
L
---------
G
L
D
E
L
G
LE
K
R
D
R
E
I
L
E
V
L
I
L
RFGGGPVG
L
A
T
L
A
T
A
L
S
E
D
P
G
T
L
E
E
V
H
E
P
Y
L
I
R
Q
G
L
L
K
-
R
T
P
R
G
R
-
V
P
T
E
L
A
Y
R
H
L
---
G
Y
P
P
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
71
PsiBlast_CBE
42.20
50%
-183
- C3 -
-
5C1B
1
TERA_HUMAN
D:
[513-553]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
PsiBlast_CBE
41.89
50%
-164
- C3 -
-
5FTK
1
TERA_HUMAN
E:
[514-568]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
72
PsiBlast_CBE
41.86
50%
-181
- C3 -
-
5C1B
1
TERA_HUMAN
C:
[513-553]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
PsiBlast_CBE
41.78
50%
-164
- C3 -
-
5FTK
1
TERA_HUMAN
D:
[514-568]
-------------------------------------------
V
L
F
Y
G
P
P
G
C
G
K
T
L
L
A
K
A
I
A
N
E
C
Q
A
-
N
F
I
-----------------------
S
I
K
-
G
P
E
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------