@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3XYC6: (2018-01-08 )
MEMEHINENTIRVLIGHEDLEERGVSFLDLLGNHKEIENFFYSILEEVDIEEEFRGSEAVTFQVLPKGDGLELFISKNLPDEEISQSEDSTVDSEDVSDFLRQQIIGSDPEEELSGSALEEQERQATFAFEDFEQVIQLATDVELESAWTDLYLFEERYYLVVHFWMENLNQADVENQIARILEFAEKSDRTPETLNEYGQCLMARNAIERTKFYFV
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50---........60........70........80.....-...90..-......100...--.---...110.......120........130.......140.-.-.....-----150.......-160....----...170.......180.......190.......200.......210.....----------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEMEHINEN
T
I
R
V
L
IG
H
E
D
L
E
E
R
G
V
S
F
L
D
L
LGN
H
K
E
I
E
N
F
F
Y
S
I
L
E
EVD
I
E
---
E
EFRGS
E
A
V
T
F
Q
V
LPKGD
G
L
E
L
F
ISKNL
P
D
E
E
ISQ-SEDSTV
D
-
S
E
D
V
S
D
F
L
R
Q
Q
I--I---GSD
P
E
E
E
LSG
S
A
L
E
E
-
Q
E
R
Q
ATF
A
F
E
D
F
E
Q
V
I
Q
L
A
TDV-
E
-
L
E
SAW-----T
D
L
Y
L
F
E
E
R
Y
-
Y
L
V
V
H
F
W
----
M
E
NL
N
Q
A
D
V
E
N
Q
I
A
R
I
L
E
F
A
E
KSDRT
P
E
T
L
N
E
Y
G
Q
C
L
M
A
R
NAIER
T
K
F
Y
FV----------------------------------------------------------
24
PsiBlast_CBE
85.17
38%
-154
- C2 -
-
2Y1R
3
MECA1_BACSU
M:
[6-97]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
Q
F
V
L
R
F
G
D
F
E
D
V
I
S
L
S
-
K
L
----
N
G
S
K
-----
T
T
L
Y
S
F
E
N
R
Y
-
Y
L
Y
V
D
F
C
------
N
M
T
D
E
E
V
E
N
Q
L
S
I
L
L
E
Y
A
T
E
S
S
I
S
I
H
R
L
E
E
Y
G
K
L
I
I
S
E
H
A
L
E
T
I
K
K
H
F
A
----------------------------------------------------------
21
PsiBlast_CBE
84.99
38%
-142
- C2 -
-
2Y1R
1
P:
[5-97]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
L
Q
F
V
L
R
F
G
D
F
E
D
V
I
S
L
S
-
K
L
-
N
-
V
N
G
S
K
-----
T
T
L
Y
S
F
E
N
R
Y
-
Y
L
Y
V
D
F
C
------
N
M
T
D
E
E
V
E
N
Q
L
S
I
L
L
E
Y
A
T
E
S
S
I
S
I
H
R
L
E
E
Y
G
K
L
I
I
S
E
H
A
L
E
T
I
K
K
H
F
A
----------------------------------------------------------
1
PsiBlast_PDB
84.82
38%
-136
- C2 -
-
2Y1R
1
MECA1_BACSU
I:
[5-97]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
L
Q
F
V
L
R
F
G
D
F
E
D
V
I
S
L
S
-
K
L
-
N
-
V
N
G
S
K
-----
T
T
L
Y
S
F
E
N
R
Y
-
Y
L
Y
V
D
F
C
------
N
M
T
D
E
E
V
E
N
Q
L
S
I
L
L
E
Y
A
T
E
S
S
I
S
I
H
R
L
E
E
Y
G
K
L
I
I
S
E
H
A
L
E
T
I
K
K
H
F
A
----------------------------------------------------------
26
PsiBlast_CBE
84.47
38%
-137
- C2 -
-
2Y1R
1
MECA1_BACSU
J:
[4-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-
Q
K
L
Q
F
V
L
R
F
G
D
F
E
D
V
I
S
L
S
-
K
L
-
N
-
V
N
G
S
K
-----
T
T
L
Y
S
F
E
N
R
Y
-
Y
L
Y
V
D
F
C
------
N
M
T
D
E
E
V
E
N
Q
L
S
I
L
L
E
Y
A
T
E
S
S
I
S
I
H
R
L
E
E
Y
G
K
L
I
I
S
E
H
A
L
E
T
I
K
K
H
F
A
----------------------------------------------------------
25
PsiBlast_CBE
84.23
38%
-144
- C2 -
-
2Y1R
1
MECA1_BACSU
K:
[6-97]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
Q
F
V
L
R
F
G
D
F
E
D
V
I
S
L
S
-
K
L
-
N
-
V
N
G
S
K
-----
T
T
L
Y
S
F
E
N
R
Y
-
Y
L
Y
V
D
F
C
------
N
M
T
D
E
E
V
E
N
Q
L
S
I
L
L
E
Y
A
T
E
S
S
I
S
I
H
R
L
E
E
Y
G
K
L
I
I
S
E
H
A
L
E
T
I
K
K
H
F
A
----------------------------------------------------------
2
PsiBlast_PDB
82.26
37%
-160
- C2 -
-
3JTP
-
MECA1_BACSU
A:
[7-97]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
F
V
L
R
F
G
D
F
E
D
V
I
S
L
S
-
K
L
-
N
-
V
N
G
S
K
-----
T
T
L
Y
S
F
E
N
R
Y
-
Y
L
Y
V
D
F
C
------
D
M
T
D
E
E
V
E
N
Q
L
S
I
M
L
E
Y
A
N
E
S
S
I
S
I
H
R
L
E
E
Y
G
K
L
I
I
S
E
H
A
L
E
T
I
K
K
H
F
A
----------------------------------------------------------
40
HHSearch
79.71
39%
-138
- C2 -
-
3JTP
-
D:
[6-97]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
Q
F
V
L
R
F
G
D
F
E
D
V
I
S
L
S
K
L
N
-
V
--
N
G
S
K
-----
T
T
L
Y
S
F
E
N
R
Y
-
Y
L
Y
V
D
F
C
----
D
--
M
T
D
E
E
V
E
N
Q
L
S
I
M
L
E
Y
A
N
E
S
S
I
S
I
H
R
L
E
E
Y
G
K
L
I
I
S
E
H
A
L
E
T
I
K
K
H
F
A
----------------------------------------------------------
34
Fugue
78.01
21%
-
- C- -
-
3Q9D
-
Y803_CHLPN
A:
[8-182]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
L
E
-------------------
D
N
V
F
L
L
L
E
G
N
L
K
R
I
F
A
T
P
I
G
Y
----------
T
T
F
R
E
F
Q
N
V
V
F
N
C
A
N
---------------------------
G
-
Q
Q
E
I
A
N
F
F
F
E
M
L
--
I
---
N
G
K
L
T
Q
E
L
A
----
P
Q
-
Q
K
Q
A
A
H
S
L
I
A
E
F
M
M
P
I
R
V
A
K
D
I
-
H
-
E
R
G
E
F
IN
F
I
T
S
D
M
L
T
Q
Q
E
R
C
-
I
F
L
N
R
L
A
R
VDG
Q
E
F
L
L
M
T
D
V
Q
N
T
C
H
L
I
R
H
L
L
A
R
L
L
E
A
Q
K
N
P
V
G
E
K
N
L
Q
E
I
Q
E
E
I
T
S
L
K
N
H
F
D
E
L
T
K
A-----------------------------------------------------
37
HHSearch
67.19
31%
-124
- C2 -
-
2MK6
-
?
A:
[1-83]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
E
R
I
N
E
H
T
V
K
F
Y
M
S
Y
G
D
I
E
D
R
G
F
D
R
E
E
I
W
Y
N
R
E
R
S
E
E
L
F
W
E
V
M
D
E
V
H
E
E
---
E
E
F
A
V
E
G
P
L
W
I
Q
V
Q
A
L
D
K
G
L
E
I
I
V
T
K
A
Q
L
S
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
66.98
28%
-123
- C2 -
-
2MK6
-
?
A:
[1-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
E
R
I
N
E
H
T
V
K
F
Y
M
S
Y
G
D
I
E
D
R
G
F
D
R
E
E
I
W
Y
N
R
E
R
S
E
E
L
F
W
E
V
M
D
E
V
H
E
E
---
E
E
F
A
V
E
G
P
L
W
I
Q
V
Q
A
L
D
K
G
L
E
I
I
V
T
K
A
Q
L
S
K
D
L
D
K
-
L
V
P
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
65.61
33%
-154
- C2 -
-
2MK6
-
?
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
E
R
I
N
E
H
T
V
K
F
Y
M
S
Y
G
D
I
E
D
R
G
F
D
R
E
E
I
W
Y
N
R
E
R
S
E
E
L
F
W
E
V
M
D
E
V
H
E
E
---
E
E
F
A
V
E
G
P
L
W
I
Q
V
Q
A
L
D
K
G
L
E
I
I
V
T
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
63.89
27%
-45
- C2 -
-
3JTN
-
MECA2_BACSU
A:
[2-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
I
Y
Q
F
H
S
F
E
D
I
I
Q
L
S
E
S
L
-
Q
R
I
G
I
T
G
-----
G
T
V
Y
H
Y
D
G
Q
Y
-
F
L
S
L
--------
E
D
L
G
S
H
T
A
E
G
V
V
A
V
L
A
E
Y
G
N
P
T
T
L
T
I
Y
R
L
Q
E
Y
G
K
L
I
M
D
G
N
A
V
E
T
I
Q
T
H
F
-----------------------------------------------------------
38
HHSearch
63.26
25%
-63
- C2 -
-
3JTN
-
MECA2_BACSU
A:
[2-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
I
Y
Q
F
H
S
F
E
D
I
I
Q
L
S
E
S
L
Q
R
-
I
G
I
T
G
-----
G
T
V
Y
H
Y
D
G
Q
Y
-
F
L
S
L
E
D
L
----
G
----
S
H
T
A
E
G
V
V
A
V
L
A
E
Y
G
N
P
T
T
L
T
I
Y
R
L
Q
E
Y
G
K
L
I
M
D
G
N
A
V
E
T
I
Q
T
H
F
-----------------------------------------------------------
39
HHSearch
62.65
24%
-74
- C2 -
-
3JTO
-
MECA2_BACSU
A:
[4-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
I
I
Y
Q
F
H
S
F
E
D
I
I
Q
L
S
E
S
L
Q
R
-
I
G
I
T
G
-----
G
T
V
Y
H
Y
D
G
Q
Y
-
F
L
S
L
E
D
L
----
G
----
S
H
T
A
E
G
V
V
A
V
L
A
E
Y
G
N
P
T
T
L
T
I
Y
R
L
Q
E
Y
G
K
L
I
M
D
G
N
A
V
E
T
I
Q
T
H
F
S
----------------------------------------------------------
4
PsiBlast_PDB
61.32
26%
-57
- C2 -
-
3JTO
-
MECA2_BACSU
A:
[8-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Q
F
H
S
F
E
D
I
I
Q
L
S
E
S
L
-
Q
R
I
G
I
T
G
-----
G
T
V
Y
H
Y
D
G
Q
Y
-
F
L
----
S
----
L
E
D
L
G
S
H
T
A
E
G
V
V
A
V
L
A
E
Y
G
N
P
T
T
L
T
I
Y
R
L
Q
E
Y
G
K
L
I
M
D
G
N
A
V
E
T
I
Q
T
H
F
-----------------------------------------------------------
5
PsiBlast_PDB
60.22
26%
-37
- C2 -
-
3JTN
-
MECA2_BACSU
A:
[5-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Q
F
H
S
F
E
D
I
I
Q
L
S
E
S
L
-
Q
R
I
G
I
T
G
-----
G
T
V
Y
H
Y
D
G
Q
Y
-
F
L
----
S
----
L
E
D
L
G
S
H
T
A
E
G
V
V
A
V
L
A
E
Y
G
N
P
T
T
L
T
I
Y
R
L
Q
E
Y
G
K
L
I
M
D
G
N
A
V
E
T
I
Q
T
H
F
-----------------------------------------------------------
10
PsiBlast_PDB
49.82
24%
6
- C2 -
-
5I8I
-
?
A:
[224-431]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
F
K
V
M
N
K
P
D
L
L
E
D
E
Y
S
R
E
F
P
K
N
P
I
S
Q
-
Y
-------
P
K
D
L
T
I
A
I
P
K
E
V
PW
F
---
G
E
T
E
N
P
K
L
Y
T
K
A
V
A
S
L
K
N
T
G
A
K
I
V
V
V
D
F
E
P
L
L
E
L
A
R
C
L
---
Y
E
G
A
W
-----
V
-----
A
E
R
Y
-
C
A
T
R
D
F
L
----
A
T
N
P
P
E
S
S
L
D
E
T
V
V
N
I
I
K
G
A
V
K
F
D
A
A
D
A
F
K
F
E
Y
----------------------------------------------------------------------------
29
Fugue
47.75
17%
50
- C2 -
-
4Q86
1
YCAO_ECOLI
A:
[2-583]
T
Q
T
F
I
P
GKDAA
L
E
D
S
I
A
R
F
Q
Q
K
L
S
D
L
G
F
Q
I
E
EASWLNPVPN
V
W
S
V
H
I
R
D
KECAL
C
F
T
N
G
K
G
AT
K
K
A
A
L
A
S
A
L
G
E
Y
F
E
R
L
S
T
NYFFADFWLG
E
T
I
A
N
GPFVHYPN
E
K
W
F
P
L
TENDDVPEGLLD
D
R
L
R
A
F
Y
D
P
ENELTGSMLIDLQSGNEDR
G
I
C
G
L
P
F
T
RQSDN
Q
T
V
Y
I
P
M
N
I
I
G
N
LYVSNG
M
S
A
GNT
R
N
E
A
R
V
Q
G
L
S
E
V
F
E
R
Y
V
K
N
R
I
I
A
E
S
I
S
L
P
E
IP
A
D
V
L
A
R
Y
P
A
V
V
E
A
I
E
T
L
E
A
E
G
F
P
I
F
A
Y
D
GSLGGQYP
V
I
C
V
V
L
F
NPANG
T
C
F
A
S
F
G
A
H
PD
F
G
V
A
L
E
R
T
V
T
E
L
L
QGRGLKDLDVFTPPTFD
D
E
E
V
A
E
H
T
N
L
E
T
H
F
I
D
S
S
G
L
I
S
W
D
L
F
K
Q
D
A
D
Y
P
F
V
D
W
N
F
S
G
T
T
E
E
E
F
A
T
L
M
A
I
F
N
K
E
D
K
E
V
Y
I
A
D
Y
E
H
L
G
V
Y
A
C
R
I
I
V
P
G
------
M
S
D
I
Y
P
A
E
D
L
W
L
-
A
N
N
S
M
-------
G
S
H
L
R
E
T
I
--
L
S
LP
G
S
E
W
E
K
E
D
Y
L
N
L
I
E
Q
-
L
D
E
E
G
F
D
D
F
T
R
V
R
E
L
L
G
L
A
T
G
S
-
D
---
N
G
W
-----
Y
T
L
R
I
G
E
L
K
A
-
M
L
A
L
A
------
G
G
D
L
E
Q
A
L
V
W
T
E
W
T
M
E
F
N
S
S
V
F
S
P
E
R
A
N
Y
Y
R
C
L
Q
T
L
L
L
L
A
Q
E
E
D
R
Q
P
L
Q
Y
L
N
A
F
V
R
M
YG
A
D
A
V
E
A
A
S
A
A
M
S
GEAAFYGLQPVDSDLHAF
A
A
H
Q
S
L
L
K
A
Y
E
K
L
Q
R
A
K
A
A
F
9
PsiBlast_PDB
47.57
35%
-115
- C2 -
-
5ERE
2
?
A:
[114-196]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
-
Q
E
Q
L
A
A
Y
-
L
T
D
F
E
R
I
A
V
L
A
M
D
N
-
N
-
L
G
S
S
W
-------
I
R
M
L
E
D
R
F
P
K
Q
V
V
A
A
Q
----
E
Y
N
P
Q
Q
M
D
I
A
A
Q
L
A
T
I
---------------------------------------------------------------------------------------------
11
PsiBlast_PDB
45.70
26%
53
- C2 -
-
4IST
1
?
A:
[247-368]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
F
K
V
M
N
K
P
D
L
L
E
D
E
Y
S
R
E
F
P
K
N
P
I
S
Q
Y
P
K
D
L
T
I
A
I
P
K
E
V
P
W
F
-----------
G
E
T
E
N
P
K
L
Y
T
K
A
V
A
S
L
K
N
T
G
A
K
I
V
V
V
D
F
E
P
L
L
E
L
A
R
C
L
---
Y
E
G
A
W
-----
V
-----
A
E
R
Y
-
C
A
T
R
D
F
L
----
A
T
N
P
P
E
S
S
L
D
E
T
V
V
N
I
I
K
G
A
V
K
F
D
-------------------------------------------------------------------------------------