@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3XZS2: (2018-01-16 )
MLLYFIIGCCIGSFLCLTAQRIPLGHSIIYPRSHCVKCCRSLSWYELIPILSIIVQRFRCRYCRCRLPFYYLLAEALCGGLFAWFFTFSSARNFSTFIWMLSALLFSLMDLFYFMVHSHTLFCSWAILWIFWLQAGVFQWQSVLLTFIVGGVCLRYGQSYLGAGDTLLMLSWSGGLSLEELLQILFLASLFGISVFSVYFICHKKKLEKLPFIPFLSSALLIVLHLRY
Atome Classification :
(20 SA)
-----...-----......10..-......20........30.-...------...--.40.----------------------......----.50------.--------...----..-----..60.....--..---------.---70..-......80.....--...90..-..-...-.100.----..-....110-----------------...-..------...----.---120.-----..-----------.--------...130-......-------.-----.-----------140.......150-----....----------.....160........--------170-.......180-----------------...--------...-----------------...190.--------------......200..---------------.-.----...210.......220---....------....------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----
M
L
L
-----
Y
F
I
I
G
C
C
I
G
S
-
F
L
C
L
T
A
Q
RIPLGHSIIYP
R
-
S
H
C
------
V
K
C
--
C
RSL----------------------
S
W
Y
E
L
I
----
P
I
L
------
S
--------
I
I
V
----
Q
R
-----
F
R
C
R
Y
C
RCR--
L
P
---------
F
---
Y
Y
L
L
-
A
E
A
L
C
G
G
L
F
A
W
F
F
--
T
FSSAR
N
-
F
S
-
T
F
I
-
W
M
L
S
A
----
L
L
-
F
S
L
M
D
-------------------
L
F
Y
-
F
M
------VHS----H---
T
L
F
C
-----
S
W
-----------
A
--------
I
L
W
I
F
--
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Q
A
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-------
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-----------
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Q
S
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L
L
T
F
I
V
G
-------
G
V
C
L
----------
R
Y
G
Q
S
YL-GAG
D
T
L
L
M
--------
L
SW-SGGL
S
L
E
E
-------------------
L
L
Q
--------
I
L
F
-----------------
L
A
S
L
F
G
I
--------------
S
V
F
S
V
Y
F
I
C
H
K
---------------
K
-
K
----
L
E
KLP
F
I
P
F
L
S
S
A
L
-----
L
I
V
L------HLRY------
31
Fugue
68.31
16%
-104
- C2 -
-
3BOE
-
?
A:
[2-210]
-----
I
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P
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A
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-
P
E
------------------------------------------------
G
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------
K
--------
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----
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GS---
D
N
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P
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--
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P
-----------------------
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--
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E
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HSS
D
---
M
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C
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-----------
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--------
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GR
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Y
-------
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RPQFD
A
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-------
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M
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----
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--------
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END
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R
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-----------------
A
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--------------
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-
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A
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A
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A
-
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----
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---
N
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-----
I
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V
P
----------------
24
Fugue
66.78
18%
-110
- C2 -
-
4MFL
3
?
A:
[23-345]
MD
P
E
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I
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---
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-------------------
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------
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----
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---
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N
M
-----------
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--------
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--
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I
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-------
Y
-----
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-----------
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G
R
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KDG
T
P
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EWGGPLL
P
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Y
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-
R
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HFPEHGAR
V
A
W
-
G
S
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W
M
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D
P
-------------------
Q
L
E
EYLTEDS
N
I
I
Q
-----------------
L
A
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T
L
TDSAPEPGNADG
D
S
S
I
L
E
F
V
F
R
Y
N
G
---------------
Q
-
P
----
L
D
E
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P
Q
R
S
S
L
E
R
A
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-----
I
A
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A
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R
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W
H
M
R
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F
V
K
L
P
25
Fugue
59.98
21%
-112
- C2 -
-
5IG8
-
?
A:
[5-326]
-PK
V
V
L
L
L
T
H
SGD
F
F
T
I
D
R
V
A
E
A
-
I
E
K
K
G
A
T
P
F
R
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D
-
T
D
K
F
P
L
-
E
V
Q
------
L
T
A
Q
F
N
G
K
K
----------------------
S
F
Y
Q
L
S
Y
NH
Q
S
I
D
------
S
--------
E
Q
V
----
Q
S
-----
V
W
T
R
--
R
I
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--
Q
P
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T
G
DLD
P
Q
F
---
R
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-
V
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--
S
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L
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PTLVTNN
P
D
A
A
R
E
F
F
-
S
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------
V
Q
G
----
R
M
V
S
K
L
L
T
-----
A
I
-----------
A
R
S
MESP
E
F
F
L
Y
T
S
--
R
V
K
A
E
D
-------
L
-----
E
EAESLRY
C
P
M
V
F
Q
A
E
I
P
K
Q
L
E
L
-------
R
V
V
V
----------
V
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-
G
A
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E
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S
Q
G
--------
A
W
Q
-
H
H
T
L
P
D
S
L
-------------------
L
Q
Q
--------
L
Q
I
-----------------
F
M
A
N
L
G
L
--------------
N
F
G
A
F
D
F
I
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GG
E
Y
V
F
L
E
VNPGGEW
G
-
M
----
L
E
R
D
L
D
L
P
-
I
S
Q
A
I
-----
A
D
F
L
------
V
F
G
-------
23
Fugue
59.81
17%
-100
- C2 -
-
5AHV
-
SLA2_YEAST
F:
[5-272]
---DS
D
L
Q
-----
K
A
L
K
K
A
C
--
S
-
V
E
E
T
A
P
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R
K
H
V
R
A
C
I
V
Y
T
W
-
D
H
-------
Q
S
S
--
K
A
V
F
----------------------
T
T
L
K
T
L
----
P
L
A
------
N
--------
D
E
V
----
Q
L
-----
F
K
M
L
I
V
L
H
K
--
I
I
---------
Q
EGH
P
S
A
L
-
A
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A
I
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D
R
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I
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GR
V
H
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G
G
S
S
-
Y
S
-
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L
I
-
R
E
Y
V
R
----
Y
L
-
V
L
K
L
D
-------------------
F
H
A
-
H
H
RGFNNG
T
F
E
----
Y
---
E
E
Y
V
-----
S
L
VSVSDPDEGYE
T
--------
I
L
D
L
M
--
S
L
Q
D
S
L
-------
D
-----
E
-----------
F
S
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I
I
F
A
S
I
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S
E
R
----------
R
N
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E
C
K
I
-
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A
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I
P
L
I
A
--------
E
S
Y
-
G
I
Y
K
F
I
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S
-------------------
M
L
R
--------
A
M
H
RQLNDAEGDAALQPLKE
R
Y
E
L
Q
H
A
--------------
R
L
F
E
F
Y
A
D
C
S
S
---------------
V
-
K
YLTT
L
V
T
I
P
K
L
P
V
D
A
P
D
V
-----
F
L
I
N
------
D
V
D
E
------
27
Fugue
48.35
15%
-91
- C2 -
-
1TWD
-
CUTC_SHIFL
A:
[2-248]
--------------
A
L
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E
I
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C
Y
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M
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GGLTPS
L
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----------------------
R
Q
R
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T
I
----
P
V
H
------
P
--------
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----
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GGDFC
Y
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A
A
I
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---
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A
A
A
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P
----
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A
-
V
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F
H
R
-------------------
A
F
D
M
C
A
------
N
P
L
----
Y
---
T
L
N
N
-----
L
A
-----------
E
--------
L
G
I
A
R
--
V
L
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G
------------------------------------
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-------
K
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A
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L
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L
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L
I
A
H
R
D
A
--------
P
I
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M
A
G
A
G
V
R
A
E
-------------------
N
L
H
--------
H
F
L
-----------------
D
A
G
V
L
E
V
--------------
H
S
S
A
G
A
W
Q
-
A
S
---------------
P
M
R
----
Y
R
N
Y
S
R
Y
I
V
D
G
A
A
V
A
E
M
K
G
I
I
E
R
------
H
Q
A
K
------
4
HHSearch
43.07
21%
-223
- C3 -
-
5K2M
-
?
F:
[3-35]
---------------------------------------------
E
C
------
P
V
C
--
G
S
E
I
----------------------
E
I
G
E
V
E
----
L
-------------------
H
----
Q
I
-----
V
E
C
P
V
C
G
A
E
--
L
E
---------
V
---
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
41.26
21%
-227
- C3 -
-
5K2M
-
?
E:
[3-35]
---------------------------------------------
E
C
------
P
V
C
--
G
S
E
I
----------------------
E
I
G
E
V
E
----
L
-------------------
H
----
Q
I
-----
V
E
C
P
V
C
G
A
E
--
L
E
---------
V
---
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
36.86
23%
-191
* C3 *
-
4QIW
-
RPOP_THEKO
W:
[8-35]
----------------------------------------------
C
------
A
K
C
--
G
K
E
V
----------------------
E
L
D
L
A
T
------------------------
A
----
R
E
-----
V
R
C
P
Y
C
G
S
K
--
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
36.23
14%
-205
- C2 -
-
3S0X
-
FLAK_METM6
A:
[505-637]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
I
G
A
L
G
----
L
I
I
A
S
V
Q
D
------------------------
E
------
I
E
D
----
Y
---
I
--------
W
I
-----------
F
--------
L
A
V
F
G
--
V
L
F
A
I
Y
S
S
I
T
L
LD
Y
-----
S
I
L
I
N
S
------
I
S
G
F
V
I
C
F
I
L
---------
G
Y
M
----------
M
F
-
L
S
G
I
-
G
G
G
D
G
K
M
L
--------
I
G
L
-
G
A
L
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P
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F
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M
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G
T
L
L
N
LNYVP
T
F
P
I
M
--------
V
F
I
-----------------
N
G
I
F
F
M
V
--------------
F
L
P
F
V
I
L
F
R
---------------------------------------------------------------
6
HHSearch
36.04
18%
-142
- C3 -
-
3WWN
-
?
B:
[3-36]
--------------------------------------------
G
T
C
------
P
E
C
--
G
A
E
L
----------------------
R
L
E
N
P
E
----
L
-------------------
G
----
E
L
-----
V
V
C
E
D
C
G
A
E
--
L
E
---------
V
---
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
34.54
31%
-346
* C2 *
-
2E74
1
PETL_MASLA
E:
[1-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
G
A
-------------------
V
F
Y
--------
I
V
F
-----------------
I
A
L
F
F
G
I
--------------
A
V
G
I
I
F
A
I
K
S
I
---------------
K
-
L
----
I
--------------------------------------
7
HHSearch
34.18
18%
-127
- C3 -
-
3WWL
-
LYSW_THET8
A:
[3-36]
--------------------------------------------
G
T
C
------
P
E
C
--
G
A
E
L
----------------------
R
L
E
N
P
E
----
L
-------------------
G
----
E
L
-----
V
V
C
E
D
C
G
A
E
--
L
E
---------
V
---
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
33.89
31%
-301
- C2 -
-
4H13
1
PETL_MASLA
E:
[1-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
G
A
-------------------
V
F
Y
--------
I
V
F
-----------------
I
A
L
F
F
G
I
--------------
A
V
G
I
I
F
A
I
K
S
I
---------------
K
-
L
----
I
--------------------------------------
17
HHSearch
33.53
25%
-141
- C3 -
-
2K5C
-
?
A:
[8-65]
------------------------------------------
M
-
A
K
C
------
P
I
C
--
G
S
P
L
----------------------
K
W
E
E
L
I
----
E
E
M
LIIEN
F
E
E
I
V
K
D
R
E
R
F
L
A
Q
V
E
E
F
V
-----
F
K
C
P
V
C
G
E
E
--
F
Y
---------
G
---
K
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
32.39
23%
-169
- C3 -
-
5X51
-
?
X:
[29-58]
-----------------------------------------
V
K
-
Y
T
C
------
G
A
C
--
A
H
N
F
----------------------
S
L
N
K
--------------------------
S
----
D
P
-----
V
R
C
K
E
C
G
H
R
--
V
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
31.57
26%
-139
- C3 -
-
4AYB
-
?
P:
[5-34]
---------------------------------------------
R
C
------
G
K
C
--
W
K
T
F
----------------------
T
D
E
Q
L
K
-------------
V
----------
L
----
P
G
-----
V
R
C
P
Y
C
G
Y
K
--
I
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
31.02
23%
-131
- C3 -
-
5FLM
-
RPAB4_BOVIN
L:
[15-44]
-----------------------------------------
M
I
-
Y
I
C
------
G
E
C
--
H
T
E
N
----------------------
E
I
K
S
---------------
R
---------------
D
P
-----
I
R
C
R
E
C
G
Y
R
--
I
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
30.81
19%
-215
- C3 -
-
2K4X
-
RS27A_THEAC
A:
[16-47]
----------------------------------------
R
K
H
-
R
F
C
------
P
R
C
--
G
P
G
V
----------------------
F
L
A
E
-------------------------
H
A
----
D
R
-----
Y
S
C
G
R
C
G
Y
T
--
E
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
29.78
29%
-146
- C3 -
-
5FMF
-
RPAB4_YEAST
L:
[29-56]
--------------------------------------------
Y
I
C
------
A
E
C
--
S
S
K
L
----------------------
S
L
S
R
--------------------------
T
----
D
A
-----
V
R
C
K
D
C
G
H
R
--
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
29.04
23%
-112
- C3 -
-
5IY9
-
RPAB4_HUMAN
L:
[15-44]
-----------------------------------------
M
I
-
Y
I
C
------
G
E
C
--
H
T
E
N
----------------------
E
I
K
S
---------------
R
---------------
D
P
-----
I
R
C
R
E
C
G
Y
R
--
I
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------