@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3Y0G5: (2018-01-20 )
MLKISYKPSTDSKEMKKEYETVNDFLQGQYLEVPPLQDHFVVTTVTLDGKEIEMPDQTISGLFNYFNK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------.-...------.....10........20-...-----------...-.-----------.30..---...----...-40....----------....50...----.---....60-.....-..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------
M
-
L
K
I
------
S
YKPST
D
S
K
E
M
K
K
E
Y
E
T
-
V
N
D
-----------
F
LQ-G-----------QYLEV---PPL----QD
H
-
F
V
V
T
T
V
----------
T
LDGKEIEM----
P
---
D
Q
T
I
S
G
-
L
F
N
Y
F-NK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
87.03
32%
-
- C10 -
-
2WMF
-
?
A:
[509-562]
------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
S
W
K
K
E
E
L
E
-
L
A
N
-----------
W
I
S
-
K
-----------
N
Y
-
S
I
---
N
P
V
----
D
N
D
-
F
R
T
T
T
L
----------
T
L
S
G
H
T
G
H
K
----
P
---
Q
I
N
I
S
G
-
D
K
N
H
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
73.89
24%
-140
- C7 -
-
4IAJ
1
?
G:
[6-71]
------------------------------------------------------------------------------------------------------------------------------------
M
-
I
E
I
------
T
Y
I
D
A
S
K
N
-
E
R
T
V
T
F
E
S
-
Y
E
D
-----------
F
E
R
-
S
-----------
Q
Q
A
C
L
---
I
G
V
----
A
D
Y
-
Y
P
V
Q
K
L
----------
T
Y
K
G
H
N
L
D
Y
----
H
---
G
-
T
Y
G
D
-
I
F
F
Y
L
-
M
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
72.54
24%
-137
* C7 *
-
4IAJ
2
?
B:
[6-71]
------------------------------------------------------------------------------------------------------------------------------------
M
-
I
E
I
------
T
Y
I
D
A
S
K
N
-
E
R
T
V
T
F
E
S
-
Y
E
D
-----------
F
E
R
-
S
-----------
Q
Q
A
C
L
---
I
G
V
----
A
D
Y
-
Y
P
V
Q
K
L
----------
T
Y
K
G
H
N
L
D
Y
----
H
---
G
-
T
Y
G
D
-
I
F
F
Y
L
-
M
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
59.62
21%
28
- C7 -
-
4IAJ
5
?
A:
[3-78]
----------------------------------------------------------------------------------------------------------------------------------VL
N
M
I
E
I
------
T
Y
I
-
D
A
S
K
N
E
R
T
V
T
F
E
S
-
Y
E
D
-----------
F
E
R
-
S
-----------
Q
Q
A
C
L
---
I
G
V
----
A
D
Y
-
Y
P
V
Q
K
L
----------
T
Y
K
G
H
N
L
D
Y
----
H
---
G
-
T
Y
G
D
-
I
F
F
Y
L
M
K
Q
DLSQYN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
54.23
24%
-192
- C8 -
-
1TYG
-
THIS_BACSU
B:
[22-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
----------
Q
L
N
G
K
D
V
K
W
----
K
KD-
T
G
T
I
Q
D
-
L
L
A
S
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
53.29
32%
-14
- C10 -
-
2WMG
1
?
A:
[501-554]
------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
S
W
K
K
E
E
L
E
-
L
A
N
-----------
W
I
S
-
K
-----------
N
Y
-
S
I
---
N
P
V
----
D
N
D
-
F
R
T
T
T
L
----------
T
L
K
G
H
--
H
K
----
P
---
Q
I
N
I
S
G
-
D
K
N
H
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
51.95
32%
-22
- C10 -
-
2WMH
-
?
A:
[501-554]
------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
S
W
K
K
E
E
L
E
-
L
A
N
-----------
W
I
S
-
K
-----------
N
Y
-
S
I
---
N
P
V
----
D
N
D
-
F
R
T
T
T
L
----------
T
L
K
G
H
--
H
K
----
P
---
Q
I
N
I
S
G
-
D
K
N
H
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
47.70
13%
-223
- C8 -
-
1F0Z
-
THIS_ECOLI
A:
[2-25]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
----------
L
F
N
D
Q
A
M
Q
C
----
A
A--
G
Q
T
V
H
E
-
L
L
E
Q
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
46.84
25%
51
- C2 -
-
3CWX
-
?
A:
[47-176]
---------------------------------------------------------------------------------------------------------------------E
V
N
P
D
I
IKDEVFDF
V
I
-
V
N
R
------
V
L
K
K
I
K
D
----
L
K
H
Y
D
P
M
I
E
K
-----------
I
F
E
M
G
-----------
L
N
V
E
I
Q
IN
P
E
V
----
K
D
F
-
F
T
F
K
S
I
S
T
TN
K
Q
R
C
F
L
S
L
R
G
E
T
R
E
I
----
L
C--
D
N
K
L
Y
N
M
L
L
A
V
F
-
N
S
YDPND
L
L
K
H
I
S
T
V
E
S
L
K
K
I
F
Y
T
I
T
C
E
A
V
Y-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
46.41
22%
63
* C9 *
-
4EYT
-
?
A:
[10-106]
--------------------------------------------------------------------------------------------------------------------------------KQNC
L
-
I
K
I
I
NIPQG
T
L
K
A
E
V
V
L
A
V
R
H
L
G
Y
E
F
-
Y
C
D
-----------
Y
I
D
-
G
Q
A
M
I
R
F
QN
S
D
E
Q
R
L
A
I
---
Q
K
L
----
L
N
H
N
N
N
K
L
Q
I
----------
E
I
R
G
Q
I
C
D
V
I
STI
P
---
E
D
E
E
K
N
-
Y
W
N
Y
I
-
K
F
KKN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
46.33
22%
-181
- C8 -
-
2LEK
-
?
A:
[2-24]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
----------
T
I
N
G
E
Q
R
E
V
----
Q
---
S
A
S
V
A
A
-
L
M
T
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
45.69
16%
-37
- C9 -
-
1LX8
-
VXIS_LAMBD
A:
[1-55]
--------------------------------------------------------------------------------------------------------------------------------------
M
Y
L
------
T
L
Q
E
W
N
A
R
Q
R
R
P
R
S
L
E
T
-
V
R
R
-----------
W
V
R
-
E
-----------
S
R
I
F
P
---
P
P
V
----
K
D
---------------------
G
R
E
Y
L
F
----
H
---
E
S
A
V
K
V
-
D
L
N
R
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
44.07
25%
73
- C3 -
-
4UIR
2
OLHYD_ELIME
A:
[2-646]
NPITSKF
D
K
V
L
N
A
SSEYGHVNHEPDSSKEQ
Q
R
N
T
PQKSMPFSDQIGNYQR
N
K
G
I
P
VQSYDN
S
K
I
Y
I
I
G
SG
I
A
G
M
S
A
A
Y
Y
F
I
R
DGHVPAKN
I
T
F
L
E
QLHIDGGSL
D
G
A
G
N
PTD
G
Y
I
I
R
G
G
R
E
M
D
MTY
E
N
L
W
D
M
F
-
Q
D
I
------
P
A
L
E
M
P
A
P
Y
S
V
L
D
E
Y
R
L
-
I
N
D
N
D
S
N
Y
S
KARLI
N
N
K
-
G
-----------
E
I
K
D
F
---
S
K
F
GLN
K
M
D
Q
-
L
A
I
I
R
L
----------
L
L
K
N
K
E
-
E
L
----
D
---
D
L
T
I
E
----
D
Y
F
-
S
E
S
F
L
K
S
N
F
W
T
F
W
R
T
M
F
AFENWHS
L
L
E
L
K
L
Y
M
H
R
F
L
HAIDGLNDLSS
L
V
F
P
KYNQYDTF
V
T
P
L
R
K
F
L
Q
E
K
G
V
N
I
H
L
NTLVK
D
L
D
I
H
I
N
TE
G
K
V
V
E
G
I
I
T
EQDG
K
E
V
K
I
P
V
G
KN
D
Y
V
I
V
TTGSMTED
T
F
Y
G
NNKTAPIIGIDNSTSGQSA
G
W
K
L
W
K
N
L
A
A
K
SEIFGKPEKFCSNIEKS
A
W
E
S
A
T
L
TCKPS
A
L
I
D
K
L
K
E
Y
SVNDPYSGKTVTG
G
I
I
T
ITDSNWL
M
S
F
T
C
N
RQPHFPEQPDD
V
L
V
L
W
V
Y
A
LFMDKEGNYIKKTMLECT
G
D
E
I
L
A
E
L
C
Y
H
L
GIEDQ
L
E
N
V
Q
K
N
T
I
V
R
T
A
F
M
PYITSMFMPRAKGD
R
P
R
VVPEGCKN
L
G
L
V
G
QFVETN
N
D
V
V
FT
M
E
S
S
V
R
T
A
R
I
A
V
Y
K
L
L
NLN
K
Q
V
P
D
I
NPLQYD
I
R
H
L
L
K
A
A
K
T
L
N
DDKPFVG
E
G
L
L
R
K
V
LKGTYFEHVLPAGEEHESF
I
A
E
H
V
N
K
F
R
E
W
V
K
G
IRG
9
HHSearch
42.68
17%
-127
- C8 -
-
3CWI
-
?
A:
[2-27]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
----------
T
V
N
G
K
P
S
T
V
----
D
GAE
S
L
N
V
T
E
-
L
L
S
A
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
42.40
17%
-154
- C8 -
-
2CU3
-
?
B:
[1-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
----------
W
L
N
G
E
P
R
P
L
----
E
---
G
K
T
L
K
E
-
V
L
E
E
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
42.04
17%
-159
- C8 -
-
2CU3
-
?
A:
[1-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
----------
W
L
N
G
E
P
R
P
L
----
E
---
G
K
T
L
K
E
-
V
L
E
E
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
41.69
35%
-123
* C8 *
-
2L6Q
-
HCP_LAMBD
A:
[22-47]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
A
T
V
----------
Q
K
D
G
R
R
V
E
F
----
T
---
A
T
S
V
S
D
-
L
K
K
Y
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
39.92
11%
-274
* C10 *
-
5MPO
-
MOC2A_HUMAN
A:
[50-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
-
A
L
Q
-----------
L
W
K
-
E
-----------
I
E
T
R
H
---
P
G
L
----
A
D
V
-
R
N
Q
I
I
F
----------
A
V
R
Q
E
Y
V
E
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
38.80
17%
-125
- C8 -
-
2K5P
-
?
A:
[2-27]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
----------
T
V
N
G
K
P
S
T
V
----
D
GAE
S
L
N
V
T
E
-
L
L
S
A
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
38.70
32%
-237
- C11 -
-
3GGQ
-
A:
[56-74]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
----
A
R
S
-
L
D
W
T
K
V
----------
T
L
D
G
R
P
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------