@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3Y1P3: (2018-01-26 )
MLNIISTNKAPNFQYTDEMDRFLMNTLAFSVGLVTEDYSTFDPEVLKIMEEEPDWLQESVAWCQSLVVGSLVDSGNYDDTGELMDEFNCLLNLYDRARQRELTSNEDNLFLNIHDKFLALLLTDDELITNLLEVE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......----...10.---..--.....-20.....----.---..30....----....40.---.......50.-.......60........70....------------.-....80.......---------.90........100....-...110...----------....120.......130...------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
L
N
I
IS----TNKAPN---FQ--
Y
T
D
E
M
-
D
R
F
L
M
N
T
----
L
---
A
F
SV
G
L
VT----EDYSTF
D
---
P
E
V
L
K
I
MEEE-
P
D
W
L
Q
E
S
V
A
W
C
Q
S
L
V
V
G
S
-LVDS------------G-NYD
D
T
G
E
L
M
D
E
F
N
---------
C
L
L
N
L
Y
D
R
A
R
Q
RELTSNE-D
N
L
F
L
N
I
H
D
----------
K
F
L
A
L
L
LT
D
D
E
L
I
T
N
L
LEVE------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
79.13
39%
-178
- C6 -
-
2AU5
-
?
A:
[4-135]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
I
L
S
--------
P
N
---
F
E
--
Y
E
E
I
T
-
R
S
F
L
S
N
M
----
L
---
A
F
T
R
G
H
F
T
----
G
D
I
S
H
F
S
---
P
I
V
L
A
E
M
E
K
D
-
P
N
W
L
E
E
A
A
G
G
M
Q
G
V
I
V
Q
S
-
L
L
E
D
------------
E
-
N
F
S
S
V
E
Q
L
K
G
E
L
A
---------
R
L
I
R
L
Y
F
A
L
A
K
D
N
L
T
E
N
Q
-
E
S
L
Y
V
D
L
F
D
----------
K
F
T
F
L
L
L
C
S
D
E
F
I
M
Y
L
D
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
49.36
15%
-55
- C5 -
-
3DUH
-
IL23A_HUMAN
C:
[1-170]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
A
V
P
----
G
G
S
S
P
A
---
W
T
--
Q
C
Q
Q
L
-
S
Q
K
L
C
-
T
----
L
---
A
W
S
A
H
N
D
V
----
P
H
I
Q
C
G
D
GCD
P
Q
G
L
R
D
N
S
Q
F
C
L
Q
R
I
H
Q
G
L
I
F
Y
E
K
L
L
G
S
D
-
I
F
-
T
------------
G
-
E
P
S
P
V
G
Q
L
H
A
S
L
L
---------
G
L
S
Q
L
L
Q
P
E
G
H
H
W
E
T
W
Q
R
-
L
L
L
R
F
K
I
L
R
----------
S
L
Q
A
F
V
A
V
A
A
R
V
F
A
H
G
A
A
T
L
S-----------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.90
50%
-844
- C6 -
-
4C0A
-
IQEC1_HUMAN
A:
[198-227]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
G
I
Y
E
R
I
R
K
R
E
L
K
T
N
E
-
D
H
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
45.05
25%
15
- C4 -
-
5UDB
2
ORC3_YEAST
C:
[52-614]
V
N
V
E
K
R
W
E
L
YHQLH
S
H
F
H
D
Q
V
D
H
I
I
D
N
I
E
A
D
L
K
A
E
I
S
D
L
L
Y
SETTQKR
R
C
F
N
T
I
F
LLGSDS
T
T
K
I
E
L
KDESSRY
N
V
L
I
E
L
T
PKESPN
V
R
M
M
L
R
R
S
M
Y
K
L
Y
S
A
A
D
A
E
E
HVSYD
L
S
L
V
E
N
FKRLFGKDL
A
M
V
F
N
FKDVDSIN
F
N
T
L
D
N
F
I
I
L
L
K
S
A
FKYDHVK
I
S
L
I
FNINTNL
S
N
I
E
K
N
LR
Q
S
T
I
R
L
LK
R
N
Y
H
K
L
D
V
SSNKG
F
K
Y
G
N
Q
I
F
Q
S
F
LDTVDGK
L
N
L
S
D
R
F
V
E
F
I
L
S
K
M
A
----
N
N
T
N
H
N
---
L
Q
--
L
L
T
K
M
L
D
Y
S
L
M
S
Y
----
F
FQN
A
F
S
V
F
I
D
P
----
V
N
V
D
F
L
N
---
D
D
Y
L
K
I
L
S
R
C
-
P
T
F
M
F
F
V
E
G
-----------------------------
L
I
K
Q
H
A
P
A
D
E
I
L
---------
S
L
L
T
N
K
N
R
G
L
E
E
F
F
V
E
F
L
V
R
E
N
P
I
N
G
H
A
----------
K
F
V
A
R
F
L
E
E
E
L
N
I
T
N
F
N
L
I
E
LYHNLLIGKLDSYLDRWSACKEYKDRLHFEPIDTIFD
N
L
L
S
W
EQV
L
P
S
L
D
K
E
N
Y
DTLSGA
P
V
L
G
Q
L
F
K
L
Y
R
E
ANMTIN
I
Y
D
F
Y
I
A
F
R
ETLP
K
E
E
I
L
N
F
I
R
K
D
P
SNTKLLELAETPDA
F
D
K
V
A
L
I
L
F
M
Q
A
I
F
A
F
E
N
M
GLIKFQSTKSYDLVEKCVWR
35
Fugue
44.92
16%
43
* C5 *
-
4LEU
-
PP266_ARATH
A:
[71-252]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLIG
K
E
A
L
F
V
I
L
G
L
K
R
L
KED
D
E
K
L
D
K
---
F
I
--
K
T
H
V
F
-
R
L
L
K
L
D
M
----
L
---
A
V
I
G
E
L
E
R
----
Q
E
E
T
A
L
A
---
I
K
M
F
E
V
I
Q
K
--
Q
E
W
Y
Q
P
D
V
F
M
Y
K
D
L
I
V
-
S
-
L
A
K
S
------------
K
-
R
M
D
E
A
M
A
L
W
E
K
M
K
K
E
N
L
F
P
D
S
Q
T
Y
T
E
V
I
R
G
F
L
R
D
G
C
P
A
D
A
-
M
N
V
Y
E
D
M
L
K
SPDPPEE
L
P
F
R
V
L
L
K
G
L
L
P
H
P
L
L
R
N
K
V
K
K
D
F
E
E
L
F
P
EKHAYDPPEE--------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
38.85
25%
-73
* C7 *
-
5HZ3
1
RGI3_ARATH
B:
[461-538]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
L
G
----
T
T
L
P
K
S
---
L
K
--
F
I
D
F
S
-
D
N
A
L
S
S
T
----
L
---
P
P
G
I
G
L
L
T
----
E
-
L
T
K
L
N
---
L
A
K
N
R
L
S
G
E
I
-
P
----
R
E
I
S
T
C
R
S
L
---
Q
-
L
L
N
L
------------
G
-
E
N
D
F
S
G
E
I
P
D
E
L
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
38.32
25%
-68
- C7 -
-
5HZ0
1
RGI3_ARATH
B:
[461-538]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
L
G
----
T
T
L
P
K
S
---
L
K
--
F
I
D
F
S
-
D
N
A
L
S
S
T
----
L
---
P
P
G
I
G
L
L
T
----
E
-
L
T
K
L
N
---
L
A
K
N
R
L
S
G
E
I
-
P
----
R
E
I
S
T
C
R
S
L
---
Q
-
L
L
N
L
------------
G
-
E
N
D
F
S
G
E
I
P
D
E
L
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
38.15
25%
-72
- C7 -
-
5HZ1
1
RGI3_ARATH
B:
[461-538]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
L
G
----
T
T
L
P
K
S
---
L
K
--
F
I
D
F
S
-
D
N
A
L
S
S
T
----
L
---
P
P
G
I
G
L
L
T
----
E
-
L
T
K
L
N
---
L
A
K
N
R
L
S
G
E
I
-
P
----
R
E
I
S
T
C
R
S
L
---
Q
-
L
L
N
L
------------
G
-
E
N
D
F
S
G
E
I
P
D
E
L
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
36.83
17%
10
- C6 -
-
2GSC
-
?
B:
[31-120]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
V
F
P
D
QER
Y
G
--
L
T
A
Q
L
-
R
R
A
A
V
S
I
----
P
---
S
N
I
A
E
G
A
A
RRS
T
P
D
Y
S
R
F
L
---
S
I
A
R
G
S
--------
L
S
E
L
D
T
Q
V
Q
I
A
A
R
L
G
-
Y
S
R
S
------------
E
-
D
D
Q
S
V
R
R
Q
V
D
L
V
F
---------
A
K
L
T
A
L
M
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
36.72
25%
-70
- C7 -
-
5HYX
1
RGI3_ARATH
B:
[461-538]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
L
G
----
T
T
L
P
K
S
---
L
K
--
F
I
D
F
S
-
D
N
A
L
S
S
T
----
L
---
P
P
G
I
G
L
L
T
----
E
-
L
T
K
L
N
---
L
A
K
N
R
L
S
G
E
I
-
P
----
R
E
I
S
T
C
R
S
L
---
Q
-
L
L
N
L
------------
G
-
E
N
D
F
S
G
E
I
P
D
E
L
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
35.54
17%
21
- C6 -
-
2GSC
-
?
D:
[31-120]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
V
F
P
D
QER
Y
G
--
L
T
A
Q
L
-
R
R
A
A
V
S
I
----
P
---
S
N
I
A
E
G
A
A
RRST
P
D
Y
S
R
F
L
---
S
I
A
R
G
S
--------
L
S
E
L
D
T
Q
V
Q
I
A
A
R
L
G
-
Y
S
R
S
------------
E
-
D
D
Q
S
V
R
R
Q
V
D
L
V
F
---------
A
K
L
T
A
L
M
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
35.24
14%
8
- C2 -
-
3BT3
-
?
A:
[134-264]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
G
Y
V
V
----
R
E
N
G
P
V
---
Y
F
T
K
D
M
D
K
T
-
V
K
W
F
E
E
I
----
L
---
G
W
S
G
D
I
V
A
----
R
D
D
E
G
F
----
G
D
Y
G
C
V
F
D
Y
P
-
S
E
V
A
V
A
H
P
F
R
G
F
H
L
F
K
G
E
-
P
I
K
G
-----------------
V
A
G
F
M
M
I
E
-----------
G
I
D
A
L
H
K
Y
V
K
E
N
G
W
D
Q
I
S
-
D
-
I
Y
T
Q
P
W
G
----------
A
R
E
C
S
I
T
T
T
D
G
C
I
L
R
F
F
E
S
I
------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
33.39
15%
-38
- C3 -
-
2L3N
-
A:
[1-104]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
----
V
S
I
L
R
S
---
S
V
--
N
H
R
E
V
-
D
E
A
I
D
N
I
----
L
---
R
Y
T
------------
N
S
T
E
---
Q
Q
F
L
E
A
M
E
S
T
-
G
G
R
V
R
I
A
I
A
K
L
L
S
K
Q
T
S
G
-
G
S
G
G
------------
S
-
K
L
G
G
S
G
G
S
R
K
D
L
S
---------
V
K
G
M
L
Y
D
S
D
S
Q
Q
I
L
N
R
L
R
-
E
R
V
S
G
S
T
A
Q
----------
S
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
33.33
14%
20
- C5 -
-
2NCJ
-
?
A:
[1-171]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRTP
L
L
L
Q
S
L
K
T
R
V
A
A
L
H
T
L
I
----
G
P
L
A
S
Q
---
R
H
--
F
S
P
R
F
-
D
R
Q
L
F
A
C
RGAR
L
---
G
D
Y
L
T
E
A
E
----
E
S
L
T
H
L
E
---
A
A
V
N
Q
G
D
A
T
R
-
V
A
W
L
A
E
R
L
A
A
Q
I
E
A
L
Q
R
E
-
A
A
T
A
T
L
R
R
H
E
NAHLPG
G
-
R
L
H
A
R
L
A
E
Y
Q
E
Y
E
---------
R
R
L
L
A
M
K
N
E
R
E
Q
R
Y
A
E
R
H
-
D
P
Q
L
A
R
E
I
T
----------
A
L
D
E
R
L
T
R
C
R
T
A
I
A
R
T
E
R
A
L
E
R
I
TR-------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
32.52
18%
-115
- C6 -
-
5UVW
-
?
B:
[56-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
R
L
E
N
------------
N
-
Y
Y
W
N
A
Q
E
C
I
Q
D
F
N
---------
T
M
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
32.39
16%
65
* C4 *
-
4QCC
-
DGOA_ECOLI
A:
[5-274]
--------------------------------------------------------------------------------------------------------------TKLP
L
I
A
I
L
R
GITPDE
A
L
A
H
V
G
A
V
I
D
A
GFD
A
V
E
I
P
LNSPQ
W
E
Q
S
I
P
A
I
V
D
A
YGDKAL
I
G
A
G
TVLK
P
E
Q
V
D
A
L
A
R
M
GCQ
L
I
V
T
PNIH
S
E
V
I
R
R
A
V
G
Y
GMTVCPGCAT
A
T
E
A
F
T
A
L
E
A
GAQ
A
L
K
I
F
P
----
S
S
A
F
G
P
---
Q
Y
--
I
K
A
L
K
-
A
V
L
P
S
D
I
----
A
---
V
F
A
V
G
G
V
T
--------------
P
E
N
L
A
Q
W
I
D
A
-
G
---------
C
A
G
A
G
L
G
S
D
L
Y
R
A
------------
G
Q
S
V
E
R
T
A
Q
Q
A
A
A
F
V
---------
K
A
Y
R
E
A
Q
K
Q
K
E
Q
R
Q
D
Q
K
S
-
A
Y
A
L
G
A
S
L
G
----------
R
Y
M
E
N
S
L
K
E
Q
E
K
L
G
I
K
L
D
K
D
Q
L
I
A
G
V
Q
D
A
F
A
DKSKLS
D
Q
E
I
E
Q
T
L
Q
A
F
E
A------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
31.46
38%
-170
- C6 -
-
4I1A
-
RAPI_BACSU
A:
[169-201]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
K
I
F
R
E
Y
-
E
E
Y
A
V
Q
T
V
R
-
C
Q
F
I
V
A
G
N
-
L
I
D
S
------------
L
-
E
Y
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
31.11
18%
-133
- C6 -
-
5UVW
-
?
A:
[56-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
R
L
E
N
------------
N
-
Y
Y
W
N
A
Q
E
C
I
Q
D
F
N
---------
T
M
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
27.90
28%
-129
- C6 -
-
2BKU
-
IMB1_YEAST
B:
[414-445]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
I
L
N
L
M
N
D
Q
-
S
L
Q
V
K
E
T
T
A
W
C
I
G
R
I
A
D
S
-
V
A
E
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
27.87
27%
-
- C6 -
-
2FYZ
-
?
F:
[447-479]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
I
S
T
E
L
---
S
K
V
N
A
S
L
Q
N
T
-
V
K
Y
I
K
E
S
N
H
Q
L
Q
S
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------