@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3Y2G5: (2018-01-30 )
MENPTFEESLQELEKIVMQLEQGDVPLESALDSFKRGMELSKHCQDTLAKAEETLTKMMTESNEEVDFDGNEES
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------.........10-------........20......-----.-------..30..-----...------.-----..-40.....---------..---.50........60---........70...-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------MENP
T
F
E
E
S
L
Q
-------
E
L
E
K
I
V
M
Q
L
-EQGDV
P
-----
L
-------
E
S
A
L
D
S
-----
F
K
R
------
G
-----
M
E
-
L
S
K
H
C
Q
D
---------
T
L
---
A
K
A
E
E
T
L
T
K
M
M
TE---SNEEVDFDGNEES-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
81.08
50%
-125
- C1 -
-
1VP7
-
EX7S_BORPE
A:
[20-67]
-----------------------------------------------------------------------------------------------------------------------------
F
E
T
A
L
A
-------
E
L
E
S
L
V
S
A
M
-
E
N
G
T
L
P
-----
L
-------
E
Q
S
L
S
A
-----
Y
R
R
------
G
-----
V
E
-
L
A
R
V
C
Q
D
---------
R
L
---
A
Q
A
E
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
77.98
39%
-66
- C1 -
-
1VP7
-
EX7S_BORPE
B:
[16-76]
-------------------------------------------------------------------------------------------------------------------------
L
P
Q
D
F
E
T
A
L
A
-------
E
L
E
S
L
V
S
A
M
-
E
N
G
T
L
P
-----
L
-------
E
Q
S
L
S
A
-----
Y
R
R
------
G
-----
V
E
-
L
A
R
V
C
Q
D
---------
R
L
---
A
Q
A
E
Q
Q
V
K
V
L
E
G
D
---
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
77.70
39%
-64
- C1 -
-
1VP7
-
EX7S_BORPE
C:
[16-76]
-------------------------------------------------------------------------------------------------------------------------
L
P
Q
D
F
E
T
A
L
A
-------
E
L
E
S
L
V
S
A
M
-
E
N
G
T
L
P
-----
L
-------
E
Q
S
L
S
A
-----
Y
R
R
------
G
-----
V
E
-
L
A
R
V
C
Q
D
---------
R
L
---
A
Q
A
E
Q
Q
V
K
V
L
E
G
D
---
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
61.62
23%
-28
- C1 -
-
2V8S
2
VTI1B_HUMAN
V:
[17-70]
----------------------------------------------------------------------------------------------------------------------------
I
F
R
G
L
L
E
-------
D
L
Q
G
V
P
E
R
L
L
G
T
A
--
G
-----
T
-------
E
E
K
K
K
L
-----
V
R
D
------
F
-----
D
E
-
K
Q
Q
E
A
N
E
---------
T
L
---
A
E
M
E
E
E
L
R
Y
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
60.82
36%
175
- C1 -
-
1VP7
-
EX7S_BORPE
A:
[13-80]
----------------------------------------------------------------------------------------------------------------------AR
P
L
P
Q
D
F
E
T
A
L
A
-------
E
L
E
S
L
V
S
-
A
M
E
N
G
T
L
P
-----
L
-------
E
Q
S
L
S
A
-----
Y
R
R
------
G
-----
V
E
-
L
A
R
V
C
Q
D
---------
R
L
---
A
Q
A
E
Q
Q
V
K
V
L
E
G
D
---
L
L
R
P
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
60.18
23%
-28
- C1 -
-
2QYW
-
VTI1B_MOUSE
A:
[17-70]
----------------------------------------------------------------------------------------------------------------------------
I
F
R
G
L
L
E
-------
D
L
Q
G
V
P
E
R
L
L
G
T
A
--
G
-----
T
-------
E
E
K
K
K
L
-----
V
R
D
------
F
-----
D
E
-
K
Q
Q
E
A
N
E
---------
T
L
---
A
E
M
E
E
E
L
R
Y
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
53.37
15%
-166
- C1 -
-
1Q2Z
-
A:
[19-57]
----------------------------------------------------------------------------------------------------------------------------
S
F
E
E
A
S
N
-------
Q
L
I
N
H
I
E
Q
F
-
L
D
T
N
E
-----------------
T
P
Y
-----
F
M
K
------
S
-----
I
D
-
C
I
R
A
F
R
E
---------
E
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
47.80
27%
51
- C1 -
-
5ANZ
3
?
A:
[45-419]
GQS
F
E
Q
W
R
D
A
F
R
Q
Q
A
L
A
G
GID
A
Q
T
F
D
R
A
F
AGVQPD
P
A
V
V
E
A
D
R
SQPE
F
T
R
P
V
W
K
Y
L
E
G
A
L
D
P
L
R
V
R
Q
G
Q
A
R
L
A
Q
H
A
R
I
L
G
E
V
D
A
R
Y
AVD
A
D
A
V
V
A
I
W
G
M
E
SNYGSHMGNKN
V
I
R
S
L
A
T
L
A
Y
E
G
R
R
P
E
F
A
H
A
-------
Q
L
L
A
A
L
K
I
L
-
Q
H
G
D
V
P
-----
A
-------
S
F
M
I
G
S
-----
W
A
G
------
A
-----
M
G
--------------------------
Q
T
Q
F
I
P
T
T
H
---
N
Q
Y
A
V
D
F
D
G
D
G
K
R
DIWGS
P
G
D
A
L
A
S
T
A
N
Y
L
K
A
S
GWIAGQPW
G
F
E
V
R
L
P
A
GFDYSLAELT
I
R
K
P
L
G
E
W
Q
G
M
G
V
Q
G
VNGGPLPSGLSG
E
Q
A
S
L
L
L
PAGHR
G
P
A
F
L
V
L
H
N
F
R
A
I
L
K
Y
NNS
S
A
Y
A
L
A
V
G
L
L
A
D
S
F
K
GGGRIVGAWPLEDVPLS
R
S
Q
R
I
E
L
Q
R
Q
L
A
A
R
GHDPGAVDGIIG
A
N
T
R
K
A
I
R
A
C
Q
Q
E
F
GWPADGYPT
P
A
L
L
D
R
L
R
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
46.32
16%
168
- C1 -
-
4OR2
9
C562_ECOLX (first)
A:
[5-372]
-----------------------------------------------------------------------------------------------------D
L
E
D
N
W
E
T
L
N
D
N
L
K
V
I
E
K
A
D
N
A
A
Q
V
K
D
A
L
T
-------
K
M
R
A
A
A
L
D
A
-
Q
K
A
T
P
P
-----
K
LEDKSPD
S
P
E
M
K
D
-----
F
R
H
------
G
-----
F
D
I
L
V
G
Q
I
D
D
---------
A
L
---
K
L
A
N
E
G
K
V
K
E
A
Q
A
---
A
A
E
Q
L
K
T
T
R
N
A
Y
I
Q
K
Y
L
I
P
V
R
Y
LEWSN
I
E
S
I
I
A
I
A
F
S
C
L
G
I
L
V
T
L
F
V
T
L
I
F
V
L
Y
R
DT
P
V
V
K
S
S
S
R
E
L
C
Y
I
I
L
A
G
I
F
L
G
Y
V
C
P
F
T
L
I
AKPT
T
T
S
C
Y
L
Q
R
L
L
V
G
L
S
S
A
M
C
Y
S
A
L
V
T
K
T
N
R
I
A
R
I
LARKPRFMS
A
W
A
Q
V
I
I
A
S
I
L
I
S
V
Q
L
T
L
V
V
T
L
I
I
M
E
P
P
M
P
I
L
S
Y
PSIK
E
V
Y
L
I
C
NTS
N
L
G
V
V
A
P
L
G
Y
N
G
L
L
I
M
S
C
T
Y
Y
A
F
K
T
R
NVPANFN
E
A
K
Y
I
A
F
T
M
Y
T
T
C
I
I
W
L
A
F
V
P
I
Y
F
G
S
NY
K
I
I
T
T
C
F
A
V
S
L
S
V
T
V
A
L
G
CMF
T
P
K
M
Y
I
I
IAKPE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
44.80
13%
-19
- C1 -
-
3ONJ
-
VTI1_YEAST
A:
[11-62]
----------------------------------------------------------------------------------------------------------------------------
D
F
K
T
T
L
E
-------
Q
A
K
A
S
L
A
E
A
-
P
S
Q
--
P
-----
L
-------
S
Q
R
N
T
T
-----
L
K
H
------
V
-----
E
Q
-
Q
Q
D
E
L
F
D
---------
L
L
---
D
Q
M
D
V
E
V
N
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
44.36
8%
-76
- C1 -
-
1VCS
-
VTI1A_MOUSE
A:
[13-64]
----------------------------------------------------------------------------------------------------------------------------
D
F
A
V
L
T
A
-------
E
I
T
S
K
I
A
R
V
-
P
R
L
--
P
-----
P
-------
D
E
K
K
Q
M
-----
V
A
N
------
V
-----
E
K
-
Q
L
E
E
A
R
E
---------
L
L
---
E
Q
M
D
L
E
V
R
E
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
44.21
23%
60
- C1 -
-
4XGC
-
?
C:
[1-676]
-------------------------------------------------------------------MQ
P
F
Y
E
E
Y
R
K
A
W
N
Q
I
N
D
H
I
A
D
L
Q
H
R
S
Y
A
R
T
L
E
Q
L
V
D
F
V
V
G
Q
A
E
RDE
V
L
P
T
A
A
L
L
T
G
I
N
Q
P
D
H
L
S
-------
Q
F
T
A
L
T
Q
R
L
-
H
A
Q
R
A
A
-----
M
-------
V
C
V
L
Q
-------------------------
S
R
D
C
A
----------
T
L
---
K
A
A
V
E
T
L
V
F
G
L
V
E
---
D
N
A
E
V
E
Q
L
R
R
S
Q
C
T
M
K
Q
L
K
S
W
Y
T
N
N
FDSEQ
K
R
R
Q
L
V
V
I
L
PDFECFN
A
S
V
L
Q
D
L
I
L
I
L
S
A
H
CGSLP
F
V
L
V
L
GVATAM
T
A
V
H
G
T
L
P
Y
H
V
S
S
K
IR
L
R
V
F
Q
T
QA
A
P
T
G
L
N
E
V
L
D
K
VLLSPKYA
F
H
L
S
G
K
T
F
K
F
L
T
H
I
F
L
Y
YDFS
I
H
G
F
I
Q
G
F
K
Y
C
L
M
E
H
F
F
GGNAFALCTD
Y
S
K
A
L
G
R
I
K
Q
LT
H
E
D
M
E
T
I
R
R
LPS
F
R
P
Y
V
E
Q
IND
C
K
R
I
I
A
V
L
TD
D
D
Y
L
K
K
K
L
P
Q
L
L
R
D
C
L
L
H
F
L
L
F
R
C
S
L
E
F
L
T
E
L
V
G
D
LPRCPLGKL
R
R
E
L
Y
V
N
C
L
N
RAIIST
P
E
Y
K
E
C
L
Q
M
L
S
F
LSK
D
E
F
V
A
K
V
N
R
A
L
E
R
T
E
Q
F
L
V
E
EIAPLEL
G
E
A
C
T
A
V
L
R
P
K
L
E
A
I
R
L
A
V
D
E
VG
R
A
L
Q
K
T
L
Q
L
I
E
T
Q
IVQDHLRALQDAPPIHELFVFSD
I
A
T
V
R
R
N
I
I
GAP
R
A
A
L
H
T
A
L
N
NPHFP
D
L
S
V
V
Y
K
L
H
L
E
C
GRMIN
L
F
D
W
L
Q
A
F
R
S
V
VP
Q
I
Q
A
R
F
T
R
A
V
A
E
L
Q
F
L
GYIKMSKRKTD
H
A
T
R
LTW
11
HHSearch
42.46
11%
-184
- C1 -
-
1PGY
-
A:
[11-37]
-----------------------------------------------------------------------------------------------------------------------------------------------
I
A
R
L
-
M
S
L
G
L
S
-----
I
-------
E
E
A
T
E
F
-----
Y
E
N
------
D
-----
V
T
-
Y
E
R
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
41.59
20%
76
- C1 -
-
1XEQ
-
NS1_INBLE
A:
[15-103]
---------------------------------------------------------------------------------------------------------------------GA
T
N
A
T
I
N
F
E
A
G
I
L
-------
E
C
Y
E
R
F
S
W
Q
-
R
A
L
D
Y
P
-----
G
-------
Q
D
R
L
H
R
-----
L
K
R
------
K
-----
L
E
-
S
R
I
K
T
H
N
K
S
E
PENKRM
S
L
---
E
E
R
K
A
I
G
V
K
M
M
K
V
L
L
F
M
D
P
S
A
G
I
E
G
F
E
P
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
40.83
16%
91
- C1 -
-
2OCC
-
COX5A_BOVIN
E:
[5-109]
-------------------------------------------------------------------------------------------------------------------HET
D
E
E
F
D
A
R
W
V
T
Y
F
N
KPDID
A
W
E
L
R
K
G
M
N
T
L
-
V
G
Y
D
L
V
PE
P
K
I
I
-------
D
A
A
L
R
A
-----
C
R
R
L
ND
F
A
S
A
-----
V
R
-
I
L
E
V
V
K
D
---------
K
A
GPH
K
E
I
Y
P
Y
V
I
Q
E
L
R
P
---
T
L
N
E
L
G
I
S
T
P
E
E
L
GLDKV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
39.33
15%
-88
- C1 -
-
5EU0
-
?
B:
[40-66]
------------------------------------------------------------------------------------------------------------------------------------------
K
T
L
E
I
L
E
G
Y
-
A
K
G
E
Y
S
-----
L
-------
E
E
F
N
T
L
-----
M
D
N
------
A
-----
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
38.64
29%
106
- C1 -
-
2PLG
-
?
A:
[21-71]
-----------------------------------------------------------------------------------------------------------------------------
L
E
N
A
V
E
-------
I
I
E
T
V
I
S
S
L
-
H
Q
G
D
A
P
-----
L
-------
V
G
Q
T
D
S
G
K
I
W
M
F
R
Y
------
G
S
A
E
V
F
V
Q
-
L
S
G
H
T
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
38.00
15%
-138
- C1 -
-
4AYB
-
?
Q:
[48-81]
--------------------------------------------------------------------------------------------------------------------------------------------
T
E
I
W
D
N
L
-
L
N
G
K
I
S
-----
V
-------
D
E
A
K
R
L
-----
F
E
D
------
N
-----
Y
K
-
D
Y
E
K
R
D
S
---------
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
37.60
23%
25
- C1 -
-
2DFS
-
MYO5A_CHICK
A:
[1019-1075]
----------------------------------------------------------------------------------------------------------------------------------
H
-------
E
T
E
Q
L
V
S
E
L
-
K
E
Q
N
T
L
-----
L
-------
K
T
E
K
E
----------------------
E
-
L
N
R
R
I
H
D
---------
Q
A
---
K
E
I
T
E
T
M
E
K
K
L
V
E
---
E
T
K
Q
L
E
L
D
L
N
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
37.28
18%
125
- C1 -
-
2LN3
-
?
A:
[1-83]
----------------------------------------------------------------------------------------------------------------------MG
L
T
R
T
I
T
S
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N
K
E
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E
L
L
E
I
A
L
K
F
-
I
S
Q
G
L
D
-----
L
-------
E
V
E
F
D
S
TD---
D
K
E
------
I
-----
E
E
-
F
E
R
D
M
E
D
---------
L
A
---
K
K
T
G
V
Q
I
Q
K
Q
W
Q
G
---
N
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I
R
L
K
G
S
L
E
H
HHHHH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------