@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3Y2I6: (2018-01-30 )
MALTPLDIQNKTFPTKMRGYNQDEVDDFLDLVVRDYEELTQRNRELEKAVKHSEEKLEYFNELKDALNQSIIVAQDTADKVKTSASKESEVIVTSAQNKADELVANAEKRAHQLTTDAEEKARKILTDATEKARQLATETEDLKKKTRVFHQRISLMLESQLEQVKSPEWDEILQPFSSYVTDSHEVIKEVLAKQLDNENDTDVNSDTGVIEAPMTAFDTQAIDISIVPGENENE
Atome Classification :
(20 SA)
------------....--.....10---.........20........30--......-------...40........50------.......-.--60.----...-....70--------....------....80..-----.-.....----90........100----------.......--..110.......------120.......130.......140--...------....---.150..-...-.--..----160..-----------......170---.........180.......190......-.200------------------.........210.-......220........230...------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------MALT--PLDIQN----KTF
P
T
KMRGY
N
Q
D
E
V
D
D
F
L
D
---
L
V
V
R
D
Y
-------
E
E
L
T
Q
R
N
R
E
L
E
K
A
V
K
------
H
S
E
E
K
L
E
-
Y
--
F
N
E
----
L
K
D
-
A
LNQ
S
I
--------
I
V
AQ------DT
A
D
K
VKT-----S-ASKES----
E
V
I
V
TSAQN
K
A
------------
D
E
L
V
A
N
A
--
E
K
R
A
H
QLTT
D
A
E
------
E
K
A
R
K
I
L
T
D
A
T
E
K
A
R
Q
L
A
T
E
T
E
---
D
L
K
------
K
K
T
R
---
V
F
H
-
Q
R
-
I
S
L
-
M
--
L
E
----
S
-
Q
L
E
-----------
Q
VKSP
E
W
-----
D
E
I
L
Q
P
F
S
S
YVT
D
S
H
E
V
I
K
E
V
L
A
K
QLDN-EN--------------------DTDVNSDTG
V
I
EA-PMTAFDT
Q
-
A
I
D
I
S
IVPGENENE------------------------------------------
32
HHSearch
61.06
35%
-193
- C2 -
-
4UG3
-
GPSB_BACSU
A:
[6-64]
------------
V
K
L
S
--
A
K
E
I
L
E
----
K
E
F
K
T
G
V
R
G
Y
K
Q
E
D
V
D
K
F
L
D
---
M
I
I
K
D
Y
-------
E
T
F
H
Q
E
I
E
E
L
Q
Q
E
N
L
------
Q
L
K
K
Q
L
E
-
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
58.46
34%
-158
- C2 -
-
4UG1
-
GPSB_LISMO
B:
[11-72]
------------
Y
H
L
T
--
G
K
E
I
L
E
----
K
E
F
K
T
G
L
R
G
Y
S
P
E
D
V
D
E
F
L
D
---
M
V
I
K
D
Y
-------
S
T
F
T
Q
E
I
E
A
L
Q
A
E
N
I
------
R
L
V
Q
E
L
D
-
N
--
A
P
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.93
39%
-185
- C2 -
-
4UG3
-
GPSB_BACSU
A:
[8-64]
--------------
L
S
--
A
K
E
I
L
E
----
K
E
F
K
T
G
V
R
G
Y
K
Q
E
D
V
D
K
F
L
D
---
M
I
I
K
D
Y
E
T
F
H
Q
E
I
E
E
L
Q
Q
E
N
L
Q
L
K
K
Q
L
E
------
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.73
25%
67
- C- -
-
4UOS
-
?
A:
[3-142]
----------------------------------------
E
E
V
K
K
M
L
E
---
K
M
I
E
E
I
-------
K
K
M
------
L
E
K
A
I
K
------
K
V
K
E
M
L
E
K
M
--
I
K
E
----
I
K
K
-
M
L
E
N
------------
G
E
------
D
------------------
S
----
E
K
I
L
K
K
A
K
E
M
A
------------
E
K
I
L
K
M
V
--
I
E
L
A
E
K
I
L
K
K
A
K
------
E
M
A
E
K
I
L
K
----
K
V
K
E
L
G
V
D
N
E
---
E
V
K
------
K
M
L
E
---
K
M
I
-
E
E
-
I
K
K
-
M
--
L
E
----
K
-
A
I
K
-----------
K
V
K
----------
E
M
L
E
K
M
----------
I
K
E
I
-
K
K
M
L
E
N
-
G
E
--------------------
D
S
E
----------------------------------------------------------------------------
4
PsiBlast_PDB
54.99
48%
-157
- C2 -
-
4UG1
-
GPSB_LISMO
A:
[13-51]
--------------
L
T
--
G
K
E
I
L
E
----
K
E
F
K
T
G
L
R
G
Y
S
P
E
D
V
D
E
F
L
D
---
M
V
I
K
D
Y
-------
S
T
F
T
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
54.33
48%
-62
- C2 -
-
2WUK
-
DIV4A_BACSU
C:
[2-56]
-------------
P
L
T
--
P
N
D
I
H
N
----
K
T
F
T
K
S
A
R
G
Y
D
E
D
E
V
N
E
F
L
A
---
Q
V
R
K
D
Y
-------
E
I
V
L
R
K
K
T
E
L
E
A
K
V
N
------
E
L
D
E
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
53.13
50%
-86
- C2 -
-
2WUJ
-
DIV4A_BACSU
A:
[3-52]
--------------
L
T
--
P
N
D
I
H
N
----
K
T
F
T
K
S
F
R
G
Y
D
E
D
E
V
N
E
F
L
A
---
Q
V
R
K
D
Y
-------
E
I
V
L
R
K
K
T
E
L
E
A
K
V
N
------
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
53.11
22%
75
- C1 -
-
4O6D
7
?
A:
[19-377]
-------LYFQS
N
A
D
T
G
C
A
I
D
I
S
R
----
Q
E
L
R
C
G
S
G
V
F
I
H
N
D
V
E
A
W
M
D
---
R
Y
K
Y
Y
P
-------
E
T
P
Q
G
L
A
K
I
I
Q
K
A
H
K
E
GVC
G
L
R
S
V
S
R
L
E
-
H
Q
M
W
E
A
----
V
K
D
-
E
L
N
T
L
L
K
E
N
GVD
L
S
V
V
V
E
------
K
Q
E
G
M
Y
K
S
AP
K
R
L
T
-
A
T
A
N
N
----
T
F
V
V
D
G
P
E
T
K
E
----------------
C
P
T
--
Q
N
R
A
W
N
S
L
E
V
E
D
------
F
G
F
G
L
T
S
T
R
M
F
L
K
V
R
E
S
N
T
T
E
C
---
D
S
K
I
I
G
T
A
V
K
N
N
L
---
A
I
H
-
S
D
-
L
S
Y
-
W
--
I
E
----
S
-
R
L
N
D
T
W
K
L
E
R
AVLG
E
V
K
S
C
T
W
-----
P
E
T
H
T
L
W
G
D
G
I
L
E
S
D
L
I
I
P
V
T
L
A
G
P
R
S
N
-
H
N
RRPGYKTQNQGPWDEG
R
V
E
I
D
F
D
Y
C
P
G
T
T
V
T
L
S
-
E
S
C
G
H
R
G
P
-
A
T
R
T
T
T
E
S
G
K
L
I
T
D
WCCR
S
C
T
L
P
P
L
R
Y
Q
T
DS
G
C
W
Y
G
MEIRPQRHDEKT
L
V
Q
S
QVNA
2
PsiBlast_PDB
52.71
47%
-97
- C- -
-
2WUK
-
DIV4A_BACSU
A:
[2-56]
-------------
P
L
T
--
P
N
D
I
H
N
----
K
T
F
T
K
S
A
R
G
Y
D
E
D
E
V
N
E
F
L
A
---
Q
V
R
K
D
Y
-------
E
I
V
L
R
K
K
T
E
L
E
A
K
V
N
------
E
L
D
E
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
52.50
47%
-86
- C2 -
-
2WUJ
-
DIV4A_BACSU
A:
[3-52]
--------------
L
T
--
P
N
D
I
H
N
----
K
T
F
T
K
S
F
R
G
Y
D
E
D
E
V
N
E
F
L
A
---
Q
V
R
K
D
Y
-------
E
I
V
L
R
K
K
T
E
L
E
A
K
V
N
------
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
51.05
47%
-71
- C- -
-
2WUJ
-
DIV4A_BACSU
B:
[3-52]
--------------
L
T
--
P
N
D
I
H
N
----
K
T
F
T
K
S
F
R
G
Y
D
E
D
E
V
N
E
F
L
A
---
Q
V
R
K
D
Y
-------
E
I
V
L
R
K
K
T
E
L
E
A
K
V
N
------
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
48.36
18%
35
- C2 -
-
5U5G
4
?
A:
[3-288]
R
V
V
G
F
I
G
LG
R
M
G
Q
A
I
C
--
R
R
L
L
A
S
----
Q
-
M
P
V
H
V
H
N
R
S
R
E
K
A
D
D
L
I
R
Q
G
A
V
W
A
P
D
I
-------
V
A
L
T
R
A
A
R
V
L
F
V
C
T
A
------
G
S
E
A
V
Q
D
-
F
--
Y
H
A
PDRG
L
L
A
-
C
L
E
V
G
D
--------
I
V
V
D
LSTIA
P
E
T
A
E
G
L
H
A
-----
A
-
F
A
Q
Q
G
A
D
Y
I
E
C
P
V
S
G
G
V
E
G
A
L
A
GI
L
S
A
I
V
S
G
R
P
E
A
Y
G
L
I
--
R
P
L
L
E
V
F
C
A
T
V
T
Y
VPEPG
K
A
Q
R
L
K
I
L
N
N
L
A
E
S
I
N
L
A
G
A
I
E
---
V
I
S
------
Q
G
L
S
---
Q
G
L
-
D
L
-
K
S
M
-
A
--
D
V
----
F
-
T
S
C
-----------
R
G
R
S
A
Y
M
-----
D
V
A
L
G
Y
A
L
S
G
G
A
S
S
N
-
V
S
L
G
V
R
C
K
D
L
E
L
A
R
R
--------------------
R
L
P
Q
D
Q
S
Y
P
F
S
T
L
-
A
M
T
T
F
D
T
V
-
R
Q
A
C
----
G
E
E
S
D
Q
CQ
Y
F
S
V
L
S
H---------------------------------
22
Fugue
48.25
35%
99
- C2 -
-
4UG1
3
GPSB_LISMO
A:
[1-70]
--G
S
H
M
T
S
E
Q
F
E
Y
H
L
T
--
G
K
E
I
L
E
----
K
E
F
K
T
G
L
R
G
Y
S
P
E
D
V
D
E
F
L
D
---
M
V
I
K
D
Y
-------
S
T
F
T
Q
E
I
E
A
L
Q
A
E
N
I
------
R
L
V
Q
E
L
D
-
N
--
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
45.98
23%
106
- C2 -
-
4PW1
1
?
A:
[16-252]
----------N
L
L
Y
L
N
--
S
G
E
E
L
N
L
Y
PW
N
L
Y
T
G
Q
E
Q
E
L
F
E
E
E
I
V
S
F
A
A
---
N
S
V
R
I
L
-------
G
G
G
S
W
T
D
E
E
L
Y
P
L
I
K
F
R
----
Y
S
G
Q
D
L
R
-
F
---------
L
K
D
M
A
L
T
E
K
--------------------
D
G
R
R
Y
L
V
-----
N
M
A
L
D
P
N
----
G
L
C
Y
F
S
Y
V
N
Q
-------------
D
E
R
E
A
T
A
--
D
----------
E
M
-----
D
Q
A
L
G
K
L
Q
E
D
W
E
K
F
L
S
-----
D
---
P
L
P
------
K
T
D
N
---
A
F
Y
M
F
F
M
R
C
Q
M
L
--
S
D
----
Q
M
R
K
E
-----------
Q
-----------------
Y
S
D
Y
I
G
D
N
L
Y
T
I
W
E
L
V
L
K
S
--------------------------
E
F
T
S
L
S
Y
D
N
H
I
Y
A
M
Y
S
N
D
G
G
T
S
M
V
L
I
Y
S
P
I
----
E
E
R
FV
G
F
S
L
K
Y----------------------------------
35
HHSearch
44.21
29%
-122
- C2 -
-
3V6I
-
?
B:
[7-55]
------------------------------------------------------------------------------------------------------------
L
I
K
S
L
--------
A
E
K
E
------
K
Q
L
L
E
R
L
E
-----
A
-
A
K
K
E
A
----
E
E
R
V
K
R
A
E
A
E
A
------------
K
A
L
L
E
E
A
--
E
A
K
A
K
A
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
43.42
40%
-116
- C2 -
-
5KP0
-
FLII_SALTY (first)
A:
[11-51]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
-
Q
R
-
I
A
L
-
L
--
S
Q
----
S
-
L
L
E
-----------
L
A
Q
R
G
E
W
-----
D
L
L
L
Q
Q
E
V
S
Y
L
----
Q
S
I
E
T
V
M
E
K
Q
---------------------------------------------------------------------------------------------------------
25
Fugue
43.10
17%
-146
- C2 -
-
3HE5
-
?
A:
[0-46]
-------------------------------------------
S
N
L
V
A
---
Q
L
E
N
E
V
-------
A
S
L
E
N
E
N
E
T
L
K
K
K
N
L
------
H
K
K
D
L
I
A
-
Y
--
L
E
K
----
E
I
A
-
N
L
R
K
K
I
--------
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
41.77
28%
84
- C2 -
-
4HL8
-
MVP_RAT
A:
[670-800]
--------------------------------------------------------------------------
E
A
A
A
K
------
H
E
A
Q
R
L
E
-----
Q
E
----
A
R
G
-
R
L
E
R
Q
K
--------
I
L
D
Q
------
S
E
A
E
K
A
R
------------
K
----
E
L
L
E
L
E
A
M
S
M
A
------------
V
E
S
T
G
N
A
--
K
A
E
A
E
S
R
A
E
A
A
R
------
I
E
G
E
G
S
V
L
Q
A
K
L
K
A
Q
A
L
A
I
E
T
E
AE
L
E
R
V
------
K
K
V
R
E
M
E
L
I
Y
-
A
R
-
A
Q
L
-
E
--
L
E
V
S
K
A
Q
-
Q
L
A
-----------
N
V
E
A
K
K
F
-----
K
E
M
T
E
-----------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
41.73
25%
84
- C2 -
-
4M0M
1
?
A:
[529-684]
----------------------------------------------------------------------------------------
E
H
L
E
-
H
--
N
Q
V
----
L
S
D
-
T
Q
K
E
E
I
--------
R
K
A
M
------
D
R
M
D
N
I
V
N
-----
D
-
S
S
K
D
S
----
Q
Q
K
Y
R
E
I
R
R
E
V
------------
I
E
L
N
A
K
A
TT
P
E
D
D
N
Q
L
T
R
S
H
F
------
Q
K
A
Y
F
E
--
G
D
T
Q
K
T
L
N
L
E
S
L
S
Q
---
T
L
N
------
Q
L
S
K
---
A
H
Y
-
G
E
-
T
S
M
-
T
D
K
I
T
----
Q
-
R
L
D
-----------
G
Y
K
N
R
N
W
F
W
N
S
V
K
E
V
L
N
F
F
N
I
P
L
P
K
L
H
S
E
V
K
E
Q
I
A
D
K
L
--------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
41.15
40%
-91
- C2 -
-
5KRW
-
FLIT_SALTY
A:
[11-51]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
-
Q
R
-
I
A
L
-
L
--
S
Q
----
S
-
L
L
E
-----------
L
A
Q
R
G
E
W
-----
D
L
L
L
Q
Q
E
V
S
Y
L
----
Q
S
I
E
T
V
M
E
K
Q
---------------------------------------------------------------------------------------------------------