@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3Y2M0: (2018-01-31 )
MSVDKKAAMKRIAELTKSESWQEDKEIVAEVQKLGKSMWTEKPKRRTPRKIAIWHDDRILVTGTAEQLSEITGLSKNIIWDRARSLWIDSKGRQFRYVEER
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------..-.....-..10........-20....-----...-----.30..-......40-----------........-.50----------..-......-------.60----------------..--------.-...--------..70-..-.---.....---80..----------...---....----------90-----...-.-...-.100--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------MS-
V
D
K
K
A
-
A
M
K
R
I
A
E
L
TKSE-S
W
Q
E
D
K
-----
E
I
V
-----
A
E
V
Q
K
-
L
G
K
S
M
WT------------EKPKRRTP-
R
K
-----------
I
A
-
I
W
HD
D
R
-------
I
L
V
----------------TG--------
T
-
A
E
Q
--------
L
S
E
I
-TG-L---S
K
N
I
I
---
W
-
D
R
----------
A
R
S---
L
W
ID----------SK-----G
R
Q
-
F
-
R
YV-EER---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
58.65
21%
34
- C3 -
-
3BT3
-
?
A:
[134-264]
-------------------------------------------------------------------------------------------------------------------------ERG
Y
V
-
V
R
E
N
G
-
P
V
Y
F
T
K
D
M
D
K
T
V
-
K
W
F
E
E
I
LG
W
S
G
D
I
V
-----
A
R
D
D
E
G
F
G
D
Y
G
C
V
F
DYPS-------
E
V
A
V
A
H
P
F
-
R
G
-----------
F
H
-
L
F
K
G
E
P
-------
I
K
G
----------------
V
A
--------
G
-
F
M
M
--------
I
E
G
I
-
D
A
-
L
---
H
K
Y
V
K
E
N
G
W
-
D
Q
IS
D
I
Y
T
Q
PW
G
A
R
E
---
C
S
I
T
----------
T
T
D----
G
C
I
-
L
-
R
F
F
-
E
S
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
57.31
23%
-5
* C3 *
-
1WUD
-
RECQ_ECOLI
A:
[530-606]
----------------------------------------------------------------------------------------------------------------------------------------------------
N
Y
D
R
-----
K
L
F
-----
A
K
L
R
K
-
L
R
K
S
I
A
D
------------
E
S
N
V
P
-----
P
-----------
Y
V
-
V
F
N
D
A
T
-------
L
I
---------------------------
E
M
A
E
Q
M-------
P
I
T
A
-
S
E
M
L
---
S
V
N
G
V
---
G
M
R
K
----------
L
E
R
---
F
--------------------
G
K
P
-
F
M
A
L
I
-
R
A
H
V
D
GD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
55.62
14%
-60
- C3 -
-
2L6M
-
A:
[21-121]
----------------------------------------------------------------------------------------------------------------------------
M
K
-
G
D
I
E
H
-
K
V
Y
Q
L
L
K
D
Q
G
C
E
-
D
F
G
-
T
K
-----
C
V
I
-----
E
E
V
K
S
-
S
H
K
T
L
L
N
------------
T
E
L
H
L
T
K
Y
-
Y
G
-----------
F
S
-
F
F
R
H
G
N
-------
I
V
A
----------------
Y
G
--------
K
-
S
R
K
-------------
V
A
-
N
---
A
K
Y
I
M
---
K
-
Q
R
----------
L
L
K
---
L
L
E
D
----------
K
S
-----
N
L
L
-
L
-
Y
S
C
-
N
C
K
F
S
K
K
K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
53.80
16%
-21
- C3 -
-
3FRW
-
?
A:
[8-101]
----------------------------------------------------------------------------------------------------------------------------
I
R
-
T
E
E
V
D
-
H
L
F
E
A
I
L
C
L
K
N
---------------
K
-----
E
E
C
Y
T
-
F
F
E
D
V
C
T
------------
I
N
E
L
L
S
L
S
-
Q
R
-----------
F
E
-
V
A
---
K
M
------
L
T
D
----------------
K
R
--------
T
-
Y
L
D
--------
I
S
E
K
-
T
G
-
A
---
S
T
A
T
I
---
S
-
R
V
----------
N
R
S
---
L
N
Y
G
----------
N
D
-----
G
Y
E
M
V
-
F
S
R
M
K
E
K
E
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
52.23
19%
121
- C3 -
-
5UBP
-
?
A:
[11-479]
PDKK
K
K
Y
M
IND
A
K
T
I
Q
L
V
GPLISSPDNLGFQKRSHKARELPRFLINQEPQLEKRA
F
V
Q
D
P
W
D
K
A
N
Q
E
K
M
I
S
L
E
E
S
IDD
L
N
E
L
Y
E
T
L
K
K
M
R
N
T
E
R
S
I
M
E
E
K
GLVDKADSAKDLYDAIVFQGTCLD
M
C
-
P
T
F
E
R
-
S
R
R
N
V
E
Y
T
V
Y
S
Y
-
E
K
N
Q
P
N
-----
D
K
K
-----
A
S
R
T
K
-
A
L
K
V
-
F
A
------------
R
P
A
A
A
A
A
P
-
P
L
-----------
P
S
-
D
V
R
P
P
H
-------
I
L
V
----------------
K
T
--------
L
-
D
Y
I
--------
V
D
N
L
-
L
T
-
T
LPE
S
E
G
F
L
---
W
-
D
R
----------
M
R
S
---
I
R
Q
D
----------
F
T
Y
Q
NYS
G
P
E
-
A
-
V
D
C
-
N
E
R
I
V
R
I
H
L
L
I
L
H
I
M
V
K
S
NVEFS
L
Q
Q
E
L
E
Q
L
H
K
S
L
I
T
L
S
E
I
Y
D
D
V
R
S
S
GGTCPN
E
A
E
F
R
A
Y
A
L
L
S
KIRDP
Q
Y
D
E
N
I
Q
R
LP
K
H
I
F
Q
D
K
L
V
Q
M
A
L
C
F
R
R
V
I
SNSAYTERG
F
V
K
T
E
NCLNF
Y
A
R
F
F
Q
L
M
Q
SPSLP
L
L
M
G
F
F
L
Q
M
H
L
T
D
I
R
F
Y
A
L
R
A
L
S
H
T
LNKKHKPIP
F
I
Y
L
E
N
M
L
LFNN
R
Q
E
I
I
E
F
C
N
Y
Y
SIEIINGDAADLKTLQHYSHKLSETQPL
K
K
T
Y
L
T
C
L
E
R
R
L
Q
K
T
T
Y
K
G
L
I
N
G
5
HHSearch
50.34
11%
-130
- C4 -
-
2VZ4
1
TIPA_STRLI
A:
[3-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
V
G
Q
--------
V
A
G
F
-
A
G
-
V
---
T
V
R
T
L
---
H
-
H
Y
----------
D
D
I
---
G
L
L
V
----------
P
S
ERSH-
A
G
H
-
R
-
R
Y
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
49.70
28%
-170
- C4 -
-
1Z4H
-
TORI_ECOLI
A:
[12-36]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
L
K
F
--------
I
M
A
D
-
T
G
-
F
---
G
K
T
F
I
---
Y
-
D
R
----------
I
K
S
---
G
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
49.29
20%
91
- C2 -
-
5HI8
-
?
A:
[1-136]
----------------------------------------------------------------------------------------------------------------NS
M
I
D
K
F
C
D
W
F
E
G
E
-
F
D
N
W
T
-
Q
A
A
S
--
N
P
T
K
W
A
-
H
I
I
V
K
H
-----
E
K
I
-----
S
E
Y
K
Y
-
H
T
S
S
R
Y
S
YM----------
D
K
P
Y
R
E
Q
T
-
V
D
-----------
I
E
-
Y
V
C
P
E
L
-------
I
I
V
HNPA
C
D
I
I
F
K
W
TGI
Y
F
E
G
--------
E
-
S
E
P
DCQWNG
Q
P
L
D
S
K
-
A
R
-
L
---
Y
A
D
E
Y
---
H
-
T
W
----------
D
V
G
---
Y
W
E
G
----------
S
E
-----
G
-
F
-
F
-
H
F
K
-
K
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
45.93
15%
-220
- C4 -
-
3GPV
-
?
B:
[23-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
I
G
Q
--------
V
A
K
M
-
Q
H
-
L
---
T
I
S
Q
I
---
R
-
Y
Y
----------
D
K
Q
---
G
L
F
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
44.87
34%
-60
- C1 -
-
1JLN
-
PTPRR_MOUSE
A:
[373-416]
---------------------------------------------------------------------------------------------------------------------------------------------------
W
Q
E
D
S
-----
P
V
I
-----
V
M
I
T
K
-
L
K
E
K
--
N
------------
E
K
C
V
L
Y
W
P
-
E
K
-----------
R
G
-
I
Y
G
K
V
E
-------
V
L
V
----------------
T
G
--------
V
-
T
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
44.47
25%
-107
- C4 -
-
1J9I
-
TERS_LAMBD
B:
[4-27]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
K
K
Q
--------
L
A
D
I
-
F
G
-
A
---
S
I
R
T
I
---
Q
-
N
W
----------
Q
E
Q
---
G
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
44.37
12%
-140
- C4 -
-
5I41
-
RACA_BACSU
B:
[5-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
T
N
M
--------
V
A
S
E
-
L
G
-
V
---
S
A
K
T
V
---
Q
-
R
W
----------
V
K
Q
---
L
N
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
43.80
19%
-126
- C4 -
-
1R8D
-
MTA_BACSU
A:
[4-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
V
K
Q
--------
V
A
E
I
-
S
G
-
V
---
S
I
R
T
L
---
H
-
H
Y
----------
D
N
I
---
E
L
L
N
----------
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
43.54
19%
-115
- C4 -
-
1R8D
-
MTA_BACSU
B:
[4-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
V
K
Q
--------
V
A
E
I
-
S
G
-
V
---
S
I
R
T
L
---
H
-
H
Y
----------
D
N
I
---
E
L
L
N
----------
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
42.58
22%
-148
- C4 -
-
4R24
1
TNRA_BACMW
B:
[9-35]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
--------
S
-
I
G
I
--------
V
K
E
L
-
T
G
-
L
---
S
E
R
Q
I
---
R
-
Y
Y
----------
E
K
R
---
S
L
L
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
41.37
19%
128
- C3 -
-
3FH3
-
?
A:
[12-157]
-------------------------------------------------------------------------------------------------------------------------KH
A
G
T
M
T
L
E
A
Y
M
R
F
S
A
K
L
S
E
A
K
D
E
M
G
T
K
E
Y
E
-----
V
F
T
-----
K
E
L
K
K
-
L
T
N
A
K
L
A
YGDSNGNIDYDA
L
S
S
E
K
R
E
E
M
K
K
-----------
V
S
M
G
L
Q
P
Y
F
-------
D
K
L
----------------
N
G
HKS
S
K
E
V
L
T
-
Q
E
E
--------
F
D
R
Y
M
E
A
-
L
M
--
T
H
E
I
V
---
R
-
V
K
----------
T
K
S
TGA
I
K
V
E
EIPEAY
K
E
R
F
I
K
-----
A
E
Q
-
F
M
E
Y
V
-
D
E
K
V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
41.26
19%
-174
- C4 -
-
4R4E
1
GLNR_BACSU
A:
[13-39]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-
I
G
I
--------
V
M
Q
L
-
T
E
-
L
---
S
A
R
Q
I
---
R
-
Y
Y
----------
E
E
N
---
G
L
I
F
----------
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
40.80
26%
-137
- C4 -
-
3GP4
1
?
A:
[4-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
I
K
E
--------
A
S
E
K
-
S
G
-
V
---
S
A
D
T
I
---
R
-
Y
Y
----------
E
R
I
---
G
L
I
P
----------
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
40.39
12%
-142
- C4 -
-
5I44
2
RACA_BACSU
F:
[5-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
T
N
M
--------
V
A
S
E
-
L
G
-
V
---
S
A
K
T
V
---
Q
-
R
W
----------
V
K
Q
---
L
N
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
40.29
8%
40
- C3 -
-
1EM8
-
HOLC_ECOLI
A:
[1-147]
---------------------------------------------------------------------------------------------------------------M
K
N
A
T
F
Y
L
L
DNDT
T
V
-
D
G
L
S
A
-
V
E
Q
L
V
C
E
I
A
A
E
R
-
W
R
S
G
K
R
-----
V
L
I
A
C
ED
E
K
Q
A
Y
R
-
L
D
E
A
L
W
A
------------
R
P
A
E
S
F
V
P
-
H
N
LAGEGPRGGAP
V
E
-
I
A
W
P
Q
K
R
S
S
S
RRD
I
L
I
----------------
S
L
--------
R
-
T
S
F
--------
A
D
F
A
-
T
A
-
F
---
T
E
V
V
D
---
F
-
V
P
----------
Y
E
D
---
S
L
K
Q
----------
L
A
-----
R
E
R
-
Y
-
K
A
Y
-
R
V
A
GFN
L
N
T
A
T
W
K-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------