@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3Y3C4: (2018-02-04 )
MEEKNLTVIGSYSTREEALSVIERLRNEGYERDDIVIYTTDEAASRLGFDGLSGIDVETDENRMDGEEDRSLWEKIKDTFSFDTYDSETATPENDPLYQYRGDISDGKFVITVKGYRQPETTEDTMDTQDTVSPASTMGTGLETGTGTDPMDVGGTTGFQNTTDPLNMTPGTDPMDVPGETDTMGTSKTEDIDRKPNLDDDTIQLKEEKLDVNTHDVTTGEVDIHKHVVNDTETVEVPVKREEIVIERKPVTDQSSQGTDEKLEDDTITIPIKEEQVDVSKHTVIREEVGIHKEEHEDVEKVTEDVSREELDIDTSGDVHIEDRNKKS
Atome Classification :
(18 SA)
---------------------------........-.10.-.......20......--..30------..--------....------..40........50......-..60........70.-.......80........90.......-----.100....----------....110......----------------.120.......130..-.-....140.......150...-....160.......170.......180..----.....190-----.........200--------------......---.210....---...220--.......230....------.--..240-.......250-.........260.--.-.....270.......280.......290--.......300--........310.-......320......--------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------MEEK
N
L
T
V
-
I
GSY-S
T
R
E
E
A
L
S
V
I
E
R
L
R
N--EGYE------RD--------
D
I
V
I
------
Y
TT
D
E
A
A
S
RLGFDGLSGIDV-ETDENRMD
G
E
E
D
R
S
L
-
W
E
K
I
K
D
T
FSFDTYDSETATPENDP
L
Y
-----
Q
YR-GDIS----------D
G
K
F
V
I
T
VKGYRQ----------------PETTEDTMDTQDTVSP-A-STMGTGLETGTGTDPMDVGG-TTGFQNTTDPLNMTPGTDPMDVPGETDTM----GTSKTE-------DIDRKPNLDDDT--------------
I
Q
L
K
E
E
---KLDVNTHD---VTTG
E
V
--
D
I
H
K
HVVNDT
E
T
V
E------V--PVKR
E
-
E
I
V
I
ERKP---VTDQSSQGTDEKL--E-D
D
T
I
T
I
P
IKEEQVDV
S
K
H
T
V
I
R
E
E
VGIH--
K
E
E
H
E
D
V
E
K
---
V
T
E
D
V
S
R
E
ELDI-DTSG
D
V
H
I
EDRNKKS--------------------------------------
21
Fugue
58.72
15%
-
- C4 -
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3U4T
-
?
A:
[230-487]
---------------------------
V
E
F
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A
D
F
-
L
F
K
N
-
N
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A
E
A
I
E
V
F
N
K
L
E
A
--
K
K
Y
N
------
S
P
--------
Y
I
-
Y
------
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R
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A
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T
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F
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N
-------------------------
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A
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-----
E
Y
Y
-
G
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L
M
---------
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G
-----
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P
T
T
T
D
------------
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V
F
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E
L
----
G
Q
A
Y
Y
Y
-------
N
-
K
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V
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A
D
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F
--------------
V
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E
L
---
K
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---
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R
A
--
R
A
N
A
A
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D
P
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T
K
-----------------------------------
Q
G
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A
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Y
--
Y
-
E
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--
Y
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-
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V
---
K
A
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W
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L
-
D
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N
K
K
A
I
D
G
L
K
-----------------------------------------
16
Fugue
56.98
16%
79
* C5 *
-
3PM6
-
ALF_COCIM
A:
[10-302]
---------------LKSN
R
A
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L
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A
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------
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--------
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A
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I
------
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-
A
C
R
A
A
-------------
S
V
P
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T
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H
L
D
H
A
-------
Q
D
P
E
I
I
-----
K
R
A
-
A
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----------
P
G
F
D
S
I
M
V
D
M
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F
----------------
S
-
K
E
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-
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G
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E
E
F
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A
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A
F
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N
V
H
G
N
-------
Y
G
P
R
G
V
Q
L
D
Y
E
R
--------------
L
Q
R
I
N
E
---
A
V
G
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R
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G
L
---
V
L
H
G
--------------------------------------------
A
D
P
F
T
K
E
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K
C
I
--
E
-
R
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N
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R
A
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N
E
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M
R
E
K
A
G
S
L
P
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L
H
E
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---
A
M
Q
A
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M
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S
T
G
K
A
E
F
M
--------------------------------------------
19
Fugue
54.65
20%
81
- C3 -
-
3P4G
-
?
A:
[23-323]
----------------------------
H
S
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H
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I
-
G
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A
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-
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A
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N
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A
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V
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A
TL
N
V
L
A
------
G
D
--------
D
K
V
S
------
I
D
G
N
-
V
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A
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A
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--
V
-
L
G
K
I
D
------------
A
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K
G
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V
S
A
A
-
V
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A
G
----------
T
G
N
D
E
V
Y
I
G
G
--
N
----------------
L
S
G
D
L
D
A
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D
N
D
N
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Q
I
-
G
-
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N
A
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T
G
N
D
N
L
I
I
G
------
H
D
V
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G
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M
G
T
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T
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E
V
G
R
T
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A
S
----
G
K
V
L
--------------
L
D
T
G
D
D
S
--------------
L
L
V
S
G
D
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A
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G
G
T
G
N
D
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V
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------
S
--
Q
V
W
A
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A
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N
--
E
G
D
D
S
I
Y
L
K
F
------------------
Y
T
--
K
E
Q
Y
N
N
N
S
D
---
L
R
N
R
V
A
N
F
E
--------
H
I
R
V
S
D
G
V
V
K
G
SPADFADY------------------------------
17
Fugue
54.06
12%
51
- C5 -
-
4Q4D
2
VIP2_HUMAN
A:
[7-323]
------------------------------
Q
I
V
V
G
-
I
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M
-
A
K
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P
M
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E
I
L
E
R
--
I
S
L
F
------
K
Y
--------
I
T
V
V
------
V
F
E
E
E
V
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E
P
V
E
N
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L
C
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C
-
L
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F
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A
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A
Y
A
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P
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L
I
Q
D
R
R
E
V
Y
-----
S
I
L
-
Q
A
------------
E
G
I
L
L
P
R
Y
A
I
L
N
R
----------------
D
P
N
N
P
K
E
C
N
L
I
E
G
E
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H
-
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G
E
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A
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--
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T
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A
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G
G
S
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L
F
R
K
I
G
S
R
S
S
----
V
Y
S
P
E
S
-------
N
V
R
K
T
G
S
--------------------
Y
I
Y
E
E
---
F
M
P
T
D
G
T
D
---
V
K
V
Y
T
V
--
G
P
D
Y
A
H
A
E
A
R
K
S
P
A
------
L
DG
K
V
E
R
D
-
S
---
E
G
K
E
---
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R
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P
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N
A
R
E
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L
--
I
-
A
W
K
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C
L
A
F
K
Q
T
---
V
C
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F
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L
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R
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N
---
G
--
Q
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Y
V
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V
N
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F
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F
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K
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S
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Q
F
HIPWS---------------------------------
20
Fugue
48.91
11%
43
- C5 -
-
1K5H
-
DXR_ECOLI
A:
[1-398]
-----------------------------
M
K
Q
L
T
I
-
L
G
S
T
G
S
I
G
C
S
T
L
D
V
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R
H
-
N
P
--
E
H
F
R
------
V
V
--------
A
L
V
A
------
G
K
N
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T
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M
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A
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Q
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S
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A
A
C
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A
A
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E
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-----
V
M
A
-
A
I
V
G
----------
A
A
G
L
L
P
T
L
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A
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A
GKTILLANK
E
S
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M
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G
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F
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E
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L
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L
A
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T
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T
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D
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ACRHPN
W
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H
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L
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E
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I
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K
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M
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EPQC
V
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A
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A
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A
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A
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22
Fugue
45.55
13%
144
- C2 -
-
3TNF
4
?
B:
[3-381]
L
D
E
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Q
A
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E
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I
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E
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L
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L
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L
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S
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KD
Q
E
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E
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E
G
Q
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L
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K
G
-
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----------------
D
A
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A
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E
E
A
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----
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H
K
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N
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N
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A
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A
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LGG
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L
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A
N
N
I
S
K-------------------------------------
12
HHSearch
41.73
15%
-168
- C6 -
-
2LEP
-
GLPG_ECOLI
A:
[2-27]
---------------------------------
L
M
-
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F
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A
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R
V
A
Q
A
F
V
D
Y
M
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--
Q
G
V
I
------
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
39.30
25%
-141
- C6 -
-
1X60
-
A:
[45-72]
------------------------------
L
Y
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V
Q
-
I
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D
T
L
A
A
R
A
K
N
--
A
G
F
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
37.11
15%
-133
* C6 *
-
1IXS
-
A:
[13-39]
------------------------------------------
E
S
E
A
A
E
E
A
V
M
A
L
A
A
--
L
G
F
K
------
E
A
--------
Q
A
R
A
------
V
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
34.27
10%
-184
- C6 -
-
3M05
-
?
B:
[3-43]
----------------------------
A
M
A
T
K
L
V
-
I
A
I
V
-
Q
D
K
D
-
A
N
Y
L
S
D
Q
F
I
D
--
Q
N
V
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
32.47
7%
-234
- C6 -
-
4D3H
2
?
B:
[17-58]
----------------------------
G
S
H
M
K
M
I
-
I
A
I
V
-
Q
D
Q
D
-
S
Q
E
L
A
D
Q
L
V
K
--
N
N
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
30.33
36%
-44
- C6 -
-
1UTA
-
FTSN_ECOLI
A:
[284-311]
-------------------------------
N
R
V
V
-
I
G
P
V
-
K
G
K
E
N
A
D
S
T
L
N
R
L
K
M
--
A
G
H
T
------
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
29.94
13%
-34
- C6 -
-
2MHE
-
?
B:
[128-159]
-------------------------------
K
V
E
F
-
V
G
A
Y
-
P
S
Y
D
E
A
H
K
A
W
K
A
K
A
Q
--
A
T
V
D
------
N
A
--------
H
A
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
29.71
25%
60
- C6 -
-
1UTA
-
FTSN_ECOLI
A:
[243-319]
---------------------------
K
D
E
R
R
W
M
V
Q
C
G
S
F
-
R
G
A
E
Q
A
E
T
V
R
A
Q
L
A
F
--
E
G
F
D
------
S
K
I
T
T
N
NGWN
R
V
V
I
G
PVKGK
E
N
A
D
S
T
L
N
R
L
K
M
A
G
H
T
N
C
I
R
-
L
A
A
G
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
27.85
7%
-158
- C6 -
-
4WK1
1
?
A:
[18-71]
----------------------------
G
S
H
M
K
M
I
-
I
A
I
V
-
Q
D
Q
D
-
S
Q
E
L
A
D
Q
L
V
K
--
N
N
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
27.41
27%
-5
- C6 -
-
2H80
-
A:
[15-36]
---------------------------------------
G
-
S
Q
E
I
E
A
K
E
A
C
D
W
L
R
A
--
A
G
F
P
------
Q
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
25.71
40%
17
- C6 -
-
5CEF
1
?
A:
[178-219]
------------------------------------------------------------------------------
D
T
V
I
------
V
T
T
L
Q
A
I
S
G
A
G
---
V
S
S
L
D
I
M
D
N
V
V
P
L
I
S
G
E
E
D
K
I
E
-
W
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
20.23
54%
-16
- C1 -
-
4DIB
-
?
A:
[126-162]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
--
E
-
D
V
T
I
V
V
G
V
N
E
D
Q
L
D
I
T
K
H
T
V
I
---------------------------------------------------------------------------------------