@TOME V2.3
(Mar 2018)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR10_HUMAN: (2018-03-06 )
MGHSPPVLPLCASVSLLGGLTFGYELAVISGALLPLQLDFGLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGILLSYALNYALAGTPWGWRHMFGWATAPAVLQSLSLLFLPAGTDETATHKDLIPLQGGEAPKLGPGRPRYSFLDLFRARDNMRGRTTVGLGLVLFQQLTGQPNVLCYASTIFSSVGFHGGSSAVLASVGLGAVKVAATLTAMGLVDRAGRRALLLAGCALMALSVSGIGLVSFAVPMDSGPSCLAVPNATGQTGLPGDSGLLQDSSLPPIPRTNEDQREPILSTAKKTKPHPRSGDPSAPPRLALSSALPGPPLPARGHALLRWTALLCLMVFVSAFSFGFGPVTWLVLSEIYPVEIRGRAFAFCNSFNWAANLFISLSFLDLIGTIGLSWTFLLYGLTAVLGLGFIYLFVPETKGQSLAEIDQQFQKRRFTLSFGHRQNSTGIPYSRIEISAAS

Atome Classification :

(12 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]
42 Fugue 84.9130%-117 - C2 -4GC0 3.7 XYLE_ECOLI
21 HHSearch 83.8231%-111 - C2 -4GC0 3.7 XYLE_ECOLI
22 HHSearch 82.4331%-113 - C2 -4GBY 2.9 XYLE_ECOLI
24 HHSearch 76.7426%-116 - C2 -5EQG 3.7 GTR1_HUMAN
25 HHSearch 76.4624%-103 - C2 -4ZW9 2.6 GTR3_HUMAN
6 PsiBlast_PDB 61.2327%-105 - C2 -4GC0 3.4 XYLE_ECOLI
5 PsiBlast_PDB 60.1927%-108 - C2 -4GBZ 1.8 XYLE_ECOLI
11 PsiBlast_PDB 60.0326% -71 - C2 -5EQG 3.3 GTR1_HUMAN
12 PsiBlast_PDB 59.9826% -70 - C2 -5EQH 3.7 GTR1_HUMAN
4 PsiBlast_PDB 59.9427%-105 - C2 -4GBY 3.1 XYLE_ECOLI
13 PsiBlast_PDB 58.8426% -71 - C2 -5EQI 4.0 GTR1_HUMAN
7 PsiBlast_PDB 57.6927% -61 - C2 -4ZW9 2.3 GTR3_HUMAN


Add PDB User Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]
52 -100%-159 - C2 -U052 5.3
53 -100%-141 - C2 -U053 3.2
54 -100%-141 - C2 -U054 3.5