@TOME V2.3
(Mar 2018)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR11_HUMAN: (2018-03-06 )
MRALRRLIQGRILLLTICAAGIGGTFQFGYNLSIINAPTLHIQEFTNETWQARTGEPLPDHLVLLMWSLIVSLYPLGGLFGALLAGPLAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEMIMLGRLLVGVNAGVSMNIQPMYLGESAPKELRGAVAMSSAIFTALGIVMGQVVGLRELLGGPQAWPLLLASCLVPGALQLASLPLLPESPRYLLIDCGDTEACLAALRRLRGSGDLAGELEELEEERAACQGCRARRPWELFQHRALRRQVTSLVVLGSAMELCGNDSVYAYASSVFRKAGVPEAKIQYAIIGTGSCELLTAVVSCVVIERVGRRVLLIGGYSLMTCWGSIFTVALCLQSSFPWTLYLAMACIFAFILSFGIGPAGVTGILATELFDQMARPAACMVCGALMWIMLILVGLGFPFIMEALSHFLYVPFLGVCVCGAIYTGLFLPETKGKTFQEISKELHRLNFPRRAQGPTWRSLEVIQSTEL

Atome Classification :

(13 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]
19 HHSearch 89.9437%-154 - C4 -5EQG 3.1 GTR1_HUMAN
3 PsiBlast_PDB 89.7136%-151 - C4 -5EQG 3.4 GTR1_HUMAN
4 PsiBlast_PDB 88.9736%-152 - C4 -5EQH 4.4 GTR1_HUMAN
5 PsiBlast_PDB 88.5036%-150 - C4 -5EQI 5.6 GTR1_HUMAN
6 PsiBlast_PDB 87.0236%-148 - C4 -4PYP 2.7 GTR1_HUMAN
10 PsiBlast_PDB 84.1234%-141 - C4 -4ZWC 3.2 GTR3_HUMAN
8 PsiBlast_PDB 84.0634%-134 - C4 -4ZW9 3.6 GTR3_HUMAN
9 PsiBlast_PDB 83.9334%-136 - C4 -4ZWB 2.2 GTR3_HUMAN
21 HHSearch 80.9934%-142 - C4 -4ZW9 3.6 GTR3_HUMAN
44 Fugue 69.2823% -86 * C4 *4GC0 3.2 XYLE_ECOLI
24 HHSearch 65.4621%-109 - C4 -4GC0 2.8 XYLE_ECOLI
25 HHSearch 65.0521%-111 - C4 -4GBY 2.5 XYLE_ECOLI
12 PsiBlast_PDB 60.0823%-116 - C4 -4GBY 2.5 XYLE_ECOLI


Add PDB User Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]
54 -100%-129 - C4 -U054 Calc...
55 -100%-129 - C4 -U055 2.8
56 -100%-129 - C4 -U056 2.8
57 -100%-156 - C4 -U057 4.6