@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR12_HUMAN: (2018-03-06 )
MVPVENTEGPSLLNQKGTAVETEGSGSRHPPWARGCGMFTFLSSVTAAVSGLLVGYELGIISGALLQIKTLLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVMKGQEGAASKVLGRLRALSDTTEELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVISTIPATLLVDHVGSKTFLCIGSSVMAASLVTMGIVNLNIHMNFTHICRSHNSINQSLDESVIYGPGNLSTNNNTLRDHFKGISSHSRSSLMPLRNDVDKRGETTSASLLNAGLSHTEYQIVTDPGDVPAFLKWLSLASLLVYVAAFSIGLGPMPWLVLSEIFPGGIRGRAMALTSSMNWGINLLISLTFLTVTDLIGLPWVCFIYTIMSLASLLFVVMFIPETKGCSLEQISMELAKVNYVKNNICFMSHHQEELVPKQPQKRKPQEQLLECNKLCGRGQSRQLSPET

Atome Classification :

(11 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]
21 Fugue 79.4031%-127 - C5 -4GC0 4.0 XYLE_ECOLI
33 HHSearch 78.5532%-128 - C5 -4GBY 3.2 XYLE_ECOLI
34 HHSearch 78.5332%-130 - C5 -4GC0 4.0 XYLE_ECOLI
35 HHSearch 72.3328%-106 - C5 -5EQG 5.3 GTR1_HUMAN
31 HHSearch 71.9828%-103 - C5 -4ZW9 1.5 GTR3_HUMAN
2 PsiBlast_PDB 57.6829%-117 - C5 -4GBY 2.5 XYLE_ECOLI
4 PsiBlast_PDB 57.6529%-115 - C5 -4GC0 3.2 XYLE_ECOLI
3 PsiBlast_PDB 57.2829%-114 - C5 -4GBZ 1.9 XYLE_ECOLI
8 PsiBlast_PDB 53.0627% -83 - C5 -4ZWB 2.1 GTR3_HUMAN
7 PsiBlast_PDB 53.0527% -83 - C5 -4ZW9 2.4 GTR3_HUMAN
9 PsiBlast_PDB 52.8327% -84 - C5 -4ZWC 2.9 GTR3_HUMAN


Add PDB User Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]
55 -100%-144 - C5 -U055 2.8
56 -100%-160 - C5 -U056 3.6