@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR14_HUMAN: (2018-03-06 )
MEFHNGGHVSGIGGFLVSLTSRMKPHTLAVTPALIFAITVATIGSFQFGYNTGVINAPETIIKEFINKTLTDKANAPPSEVLLTNLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAATGGCLMGLCKIAESVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQIFGLELILGSEELWPVLLGFTILPAILQSAALPCCPESPRFLLINRKKEENATRILQRLWGTQDVSQDIQEMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGVQQPIYATISAGVVNTIFTLLSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKNHYNGMSFVCIGAILVFVACFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAYYLGAYVFIIFTGFLITFLAFTFFKVPETRGRTFEDITRAFEGQAHGADRSGKDGVMGMNSIEPAKETTTNV

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]




MAL_B_7(4ZWC)
GTR3_HUMAN
[Raw transfer]




MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]




BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]




5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




3 PsiBlast_PDB 89.9194%-140 - C2 -4ZWC 4.0 GTR3_HUMAN
19 PsiBlast_CBE 89.8694%-140 - C2 -4ZWC 4.2 GTR3_HUMAN
2 PsiBlast_PDB 89.8694%-132 - C2 -4ZWB 5.9 GTR3_HUMAN
1 PsiBlast_PDB 89.7794%-132 - C2 -4ZW9 4.0 GTR3_HUMAN
21 HHSearch 89.7093%-131 - C2 -4ZW9 4.0 GTR3_HUMAN
6 PsiBlast_PDB 79.8663%-155 - C2 -5EQH 6.8 GTR1_HUMAN
22 HHSearch 79.6265%-155 - C2 -5EQG 5.8 GTR1_HUMAN
5 PsiBlast_PDB 79.2163%-155 - C2 -5EQG 5.8 GTR1_HUMAN
7 PsiBlast_PDB 78.8463%-151 - C2 -5EQI 6.7 GTR1_HUMAN
8 PsiBlast_PDB 78.4763%-152 - C2 -4PYP 5.1 GTR1_HUMAN
42 Fugue 63.1029%-100 - C2 -4GC0 4.3 XYLE_ECOLI
26 HHSearch 62.0830% -93 - C2 -4GC0 4.3 XYLE_ECOLI
14 PsiBlast_PDB 62.0529% -89 - C2 -4GC0 4.3 XYLE_ECOLI
13 PsiBlast_PDB 61.5329% -91 - C2 -4GBZ 3.7 XYLE_ECOLI