@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR1_HUMAN: (2018-03-06 )
MEPSSKKLTGRLMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWVHRYGESILPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFGLDSIMGNKDLWPLLLSIIFIPALLQCIVLPFCPESPRFLLINRNEENRAKSVLKKLRGTADVTHDLQEMKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALALLEQLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQGGASQSDKTPEELFHPLGADSQV

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_B_7(4ZWC)
GTR3_HUMAN
[Raw transfer]




MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]




BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]




BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]




XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]




5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




22 HHSearch 94.06100%-152 - C2 -5EQG 6.6 GTR1_HUMAN
1 PsiBlast_PDB 94.06100%-152 - C2 -5EQG 5.9 GTR1_HUMAN
2 PsiBlast_PDB 93.28100%-152 - C2 -5EQH 7.1 GTR1_HUMAN
3 PsiBlast_PDB 92.45100%-148 - C2 -5EQI 7.0 GTR1_HUMAN
4 PsiBlast_PDB 91.3099%-149 - C2 -4PYP 5.1 GTR1_HUMAN
6 PsiBlast_PDB 84.6265%-129 - C2 -4ZWB 5.9 GTR3_HUMAN
20 PsiBlast_CBE 84.2765%-135 - C2 -4ZWC 4.5 GTR3_HUMAN
5 PsiBlast_PDB 83.9365%-128 - C2 -4ZW9 4.0 GTR3_HUMAN
24 HHSearch 83.5667%-131 - C2 -4ZW9 4.0 GTR3_HUMAN
7 PsiBlast_PDB 82.7265%-134 - C2 -4ZWC 4.6 GTR3_HUMAN
27 HHSearch 66.7130% -93 - C2 -4GC0 4.3 XYLE_ECOLI
44 Fugue 65.5528% -96 - C2 -4GC0 4.3 XYLE_ECOLI
26 HHSearch 65.3630% -95 - C2 -4GBY 4.5 XYLE_ECOLI
14 PsiBlast_PDB 64.6128% -87 - C2 -4GC0 4.3 XYLE_ECOLI
12 PsiBlast_PDB 64.4428% -89 - C2 -4GBY 4.5 XYLE_ECOLI
13 PsiBlast_PDB 62.7228% -86 - C2 -4GBZ 4.4 XYLE_ECOLI