@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR2_HUMAN: (2018-03-06 )
MTEDKVTGTLVFTVITAVLGSFQFGYDIGVINAPQQVIISHYRHVLGVPLDDRKAINNYVINSTDELPTISYSMNPKPTPWAEEETVAAAQLITMLWSLSVSSFAVGGMTASFFGGWLGDTLGRIKAMLVANILSLVGALLMGFSKLGPSHILIIAGRSISGLYCGLISGLVPMYIGEIAPTALRGALGTFHQLAIVTGILISQIIGLEFILGNYDLWHILLGLSGVRAILQSLLLFFCPESPRYLYIKLDEEVKAKQSLKRLRGYDDVTKDINEMRKEREEASSEQKVSIIQLFTNSSYRQPILVALMLHVAQQFSGINGIFYYSTSIFQTAGISKPVYATIGVGAVNMVFTAVSVFLVEKAGRRSLFLIGMSGMFVCAIFMSVGLVLLNKFSWMSYVSMIAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPAALAIAAFSNWTCNFIVALCFQYIADFCGPYVFFLFAGVLLAFTLFTFFKVPETKGKSFEEIAAEFQKKSGSAHRPKAAVEMKFLGATETV

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]




MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]




BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]




XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]




5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




16 HHSearch 88.5958%-157 - C1 -5EQG 5.9 GTR1_HUMAN
5 PsiBlast_PDB 86.3950%-130 - C1 -4ZW9 4.1 GTR3_HUMAN
1 PsiBlast_PDB 86.2253%-154 - C1 -5EQG 5.9 GTR1_HUMAN
18 HHSearch 86.1254%-133 - C1 -4ZW9 4.1 GTR3_HUMAN
2 PsiBlast_PDB 86.0253%-155 - C1 -5EQH 6.8 GTR1_HUMAN
6 PsiBlast_PDB 85.4150%-130 - C1 -4ZWB 5.7 GTR3_HUMAN
3 PsiBlast_PDB 85.4153%-153 - C1 -5EQI 6.8 GTR1_HUMAN
4 PsiBlast_PDB 85.1752%-152 - C1 -4PYP 5.2 GTR1_HUMAN
7 PsiBlast_PDB 84.9250%-135 - C1 -4ZWC 4.0 GTR3_HUMAN
40 Fugue 66.9226%-104 - C1 -4GC0 4.4 XYLE_ECOLI
21 HHSearch 65.5728%-102 - C1 -4GC0 4.4 XYLE_ECOLI
20 HHSearch 65.3328%-105 - C1 -4GBY 3.3 XYLE_ECOLI
13 PsiBlast_PDB 58.8030%-100 - C1 -4GBZ 3.3 XYLE_ECOLI
14 PsiBlast_PDB 58.5730% -99 - C1 -4GC0 4.0 XYLE_ECOLI