@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR3_HUMAN: (2018-03-06 )
MGTQKVTPALIFAITVATIGSFQFGYNTGVINAPEKIIKEFINKTLTDKGNAPPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAVTGGCFMGLCKVAKSVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVVGILVAQIFGLEFILGSEELWPLLLGFTILPAILQSAALPFCPESPRFLLINRKEEENAKQILQRLWGTQDVSQDIQEMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGVQEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKDNYNGMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAHYLGAYVFIIFTGFLITFLAFTFFKVPETRGRTFEDITRAFEGQAHGADRSGKDGVMEMNSIEPAKETTTNV

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



MAL_B_7(4ZWC)
GTR3_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]



BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]
2 PsiBlast_PDB 86.7799%-130 - C1 -4ZWB 5.9 GTR3_HUMAN
1 PsiBlast_PDB 86.5899%-129 - C1 -4ZW9 4.0 GTR3_HUMAN
3 PsiBlast_PDB 86.3999%-138 - C1 -4ZWC 4.0 GTR3_HUMAN
22 HHSearch 86.38100%-129 - C1 -4ZW9 4.0 GTR3_HUMAN
19 PsiBlast_CBE 85.9499%-137 - C1 -4ZWC 4.2 GTR3_HUMAN
21 HHSearch 77.0367%-154 - C1 -5EQG 5.8 GTR1_HUMAN
6 PsiBlast_PDB 76.7965%-154 - C1 -5EQH 6.8 GTR1_HUMAN
5 PsiBlast_PDB 76.6465%-154 - C1 -5EQG 5.8 GTR1_HUMAN
7 PsiBlast_PDB 76.1465%-150 - C1 -5EQI 6.7 GTR1_HUMAN
8 PsiBlast_PDB 75.8365%-151 - C1 -4PYP 5.1 GTR1_HUMAN
15 PsiBlast_PDB 58.2429% -98 - C1 -4GC0 4.3 XYLE_ECOLI
42 Fugue 57.7429% -98 - C1 -4GC0 4.3 XYLE_ECOLI
13 PsiBlast_PDB 57.6929%-100 - C1 -4GBY 3.3 XYLE_ECOLI
14 PsiBlast_PDB 57.5629% -97 - C1 -4GBZ 3.7 XYLE_ECOLI