@TOME V2.3
(Mar 2018)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR5_HUMAN: (2018-03-06 )
MEQQDQSMKEGRLTLVLALATLIAAFGSSFQYGYNVAAVNSPALLMQQFYNETYYGRTGEFMEDFPLTLLWSVTVSMFPFGGFIGSLLVGPLVNKFGRKGALLFNNIFSIVPAILMGCSRVATSFELIIISRLLVGICAGVSSNVVPMYLGELAPKNLRGALGVVPQLFITVGILVAQIFGLRNLLANVDGWPILLGLTGVPAALQLLLLPFFPESPRYLLIQKKDEAAAKKALQTLRGWDSVDREVAEIRQEDEAEKAAGFISVLKLFRMRSLRWQLLSIIVLMGGQQLSGVNAIYYYADQIYLSAGVPEEHVQYVTAGTGAVNVVMTFCAVFVVELLGRRLLLLLGFSICLIACCVLTAALALQDTVSWMPYISIVCVISYVIGHALGPSPIPALLITEIFLQSSRPSAFMVGGSVHWLSNFTVGLIFPFIQEGLGPYSFIVFAVICLLTTIYIFLIVPETKAKTFIEINQIFTKMNKVSEVYPEKEELKELPPVTSEQ

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]
7 PsiBlast_PDB 69.6340%-134 - C2 -4ZW9 4.2 GTR3_HUMAN
8 PsiBlast_PDB 69.1340%-136 - C2 -4ZWB 4.2 GTR3_HUMAN
9 PsiBlast_PDB 69.0440%-139 - C2 -4ZWC 3.8 GTR3_HUMAN
5 PsiBlast_PDB 68.5142%-143 - C2 -5EQI 4.4 GTR1_HUMAN
6 PsiBlast_PDB 68.4241%-142 - C2 -4PYP 4.2 GTR1_HUMAN
4 PsiBlast_PDB 68.1742%-142 - C2 -5EQH 4.9 GTR1_HUMAN
3 PsiBlast_PDB 68.1542%-141 - C2 -5EQG 4.2 GTR1_HUMAN
22 HHSearch 66.6043%-148 - C2 -5EQG 4.2 GTR1_HUMAN
23 HHSearch 62.4240% -98 - C2 -4ZW9 4.5 GTR3_HUMAN
45 Fugue 53.7624% -95 - C2 -4GC0 3.5 XYLE_ECOLI
25 HHSearch 53.5225% -98 - C2 -4GBY 3.1 XYLE_ECOLI
26 HHSearch 53.2125% -96 - C2 -4GC0 3.5 XYLE_ECOLI
12 PsiBlast_PDB 49.5525%-105 - C2 -4GBY 2.6 XYLE_ECOLI
14 PsiBlast_PDB 49.3425%-105 - C2 -4GC0 4.5 XYLE_ECOLI


Add PDB User Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]
55 -83%-129 - C2 -4YBQ 4.3
56 -81%-155 - C2 -4YB9 4.7
57 -100%-134 - C2 -U057 4.3