@TOME V2.3
(Mar 2018)

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Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR6_HUMAN: (2018-03-06 )
MQEPLLGAEGPDYDTFPEKPPPSPGDRARVGTLQNKRVFLATFAAVLGNFSFGYALVYTSPVIPALERSLDPDLHLTKSQASWFGSVFTLGAAAGGLSAMILNDLLGRKLSIMFSAVPSAAGYALMAGAHGLWMLLLGRTLTGFAGGLTAACIPVYVSEIAPPGVRGALGATPQLMAVFGSLSLYALGLLLPWRWLAVAGEAPVLIMILLLSFMPNSPRFLLSRGRDEEALRALAWLRGTDVDVHWEFEQIQDNVRRQSSRVSWAEARAPHVCRPITVALLMRLLQQLTGITPILVYLQSIFDSTAVLLPPKDDAAIVGAVRLLSVLIAALTMDLAGRKVLLFVSAAIMFAANLTLGLYIHFGPRPLSPNSTAGLESESWGDLAQPLAAPAGYLTLVPLLATMLFIMGYAVGWGPITWLLMSEVLPLRARGVASGLCVLASWLTAFVLTKSFLPVVSTFGLQVPFFFFAAICLVSLVFTGCCVPETKGRSLEQIESFFRTGRRSFLR

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]
3 PsiBlast_PDB 81.3928%-107 - C4 -5EQG 4.2 GTR1_HUMAN
21 HHSearch 81.3828%-106 - C4 -5EQG 4.3 GTR1_HUMAN
4 PsiBlast_PDB 80.7328%-107 - C4 -5EQH 5.3 GTR1_HUMAN
5 PsiBlast_PDB 79.7028%-106 - C4 -5EQI 5.8 GTR1_HUMAN
43 Fugue 78.8125%-138 - C4 -4GC0 3.5 XYLE_ECOLI
10 PsiBlast_PDB 78.7124%-118 - C4 -4GC0 3.6 XYLE_ECOLI
8 PsiBlast_PDB 78.5424%-116 - C4 -4GBY 3.2 XYLE_ECOLI
23 HHSearch 78.4626%-139 - C4 -4GBY 3.2 XYLE_ECOLI
22 HHSearch 78.3426%-138 - C4 -4GC0 3.5 XYLE_ECOLI
2 PsiBlast_PDB 78.0428%-107 - C4 -4PYP 3.8 GTR1_HUMAN
9 PsiBlast_PDB 77.4224%-117 - C4 -4GBZ 3.3 XYLE_ECOLI
24 HHSearch 76.1726%-101 - C4 -4ZW9 2.5 GTR3_HUMAN
13 PsiBlast_PDB 75.6926%-105 - C4 -4ZW9 2.7 GTR3_HUMAN
14 PsiBlast_PDB 74.0826%-104 - C4 -4ZWB 3.9 GTR3_HUMAN
15 PsiBlast_PDB 73.1426%-102 - C4 -4ZWC 3.1 GTR3_HUMAN


Add PDB User Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]
51 -99%-139 - C4 -U051 4.6
52 -99%-123 - C4 -U052 2.8