@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR7_HUMAN: (2018-03-06 )
MENKEAGTPPPIPSREGRLQPTLLLATLSAAFGSAFQYGYNLSVVNTPHKVFKSFYNETYFERHATFMDGKLMLLLWSCTVSMFPLGGLLGSLLVGLLVDSCGRKGTLLINNIFAIIPAILMGVSKVAKAFELIVFSRVVLGVCAGISYSALPMYLGELAPKNLRGMVGTMTEVFVIVGVFLAQIFSLQAILGNPAGWPVLLALTGVPALLQLLTLPFFPESPRYSLIQKGDEATARQALRRLRGHTDMEAELEDMRAEARAERAEGHLSVLHLCALRSLRWQLLSIIVLMAGQQLSGINAINYYADTIYTSAGVEAAHSQYVTVGSGVVNIVMTITSAVLVERLGRRHLLLAGYGICGSACLVLTVVLLFQNRVPELSYLGIICVFAYIAGHSIGPSPVPSVVRTEIFLQSSRRAAFMVDGAVHWLTNFIIGFLFPSIQEAIGAYSFIIFAGICLLTAIYIYVVIPETKGKTFVEINRIFAKRNRVKLPEEKEETIDAGPPTASPAKETSF

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]




MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]




XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]




XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]




5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




21 HHSearch 77.6841%-149 - C3 -5EQG 3.0 GTR1_HUMAN
8 PsiBlast_PDB 77.6038%-132 - C3 -4ZWB 3.7 GTR3_HUMAN
3 PsiBlast_PDB 77.2139%-147 - C3 -5EQG 3.0 GTR1_HUMAN
7 PsiBlast_PDB 77.2038%-130 - C3 -4ZW9 3.6 GTR3_HUMAN
9 PsiBlast_PDB 77.1538%-136 - C3 -4ZWC 3.0 GTR3_HUMAN
6 PsiBlast_PDB 76.7739%-145 - C3 -4PYP 2.7 GTR1_HUMAN
4 PsiBlast_PDB 75.9139%-149 - C3 -5EQH 4.6 GTR1_HUMAN
5 PsiBlast_PDB 75.7639%-146 - C3 -5EQI 4.6 GTR1_HUMAN
23 HHSearch 74.5539%-115 * C3 *4ZW9 2.6 GTR3_HUMAN
45 Fugue 64.0624% -90 - C3 -4GC0 3.5 XYLE_ECOLI
26 HHSearch 59.8925% -84 - C3 -4GBY 3.1 XYLE_ECOLI
25 HHSearch 59.5925% -84 - C3 -4GC0 3.5 XYLE_ECOLI
12 PsiBlast_PDB 57.8625%-111 - C3 -4GBY 3.9 XYLE_ECOLI
14 PsiBlast_PDB 57.7525%-111 - C3 -4GC0 4.3 XYLE_ECOLI