@TOME V2.3
(Mar 2018)

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Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR8_HUMAN: (2018-03-06 )
MTPEDPEETQPLLGPPGGSAPRGRRVFLAAFAAALGPLSFGFALGYSSPAIPSLQRAAPPAPRLDDAAASWFGAVVTLGAAAGGVLGGWLVDRAGRKLSLLLCSVPFVAGFAVITAAQDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVVGILLAYLAGWVLEWRWLAVLGCVPPSLMLLLMCFMPETPRFLLTQHRRQEAMAALRFLWGSEQGWEDPPIGAEQSFHLALLRQPGIYKPFIIGVSLMAFQQLSGVNAVMFYAETIFEEAKFKDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLSGVVMVFSTSAFGAYFKLTQGGPGNSSHVAISAPVSAQPVDASVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFSVLFTLFCVPETKGKTLEQITAHFEGR

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]
1 PsiBlast_PDB 90.5631%-122 - C2 -4ZW9 3.7 GTR3_HUMAN
2 PsiBlast_PDB 89.3531%-119 - C2 -4ZWB 3.9 GTR3_HUMAN
19 HHSearch 88.8030%-128 - C2 -5EQG 4.1 GTR1_HUMAN
3 PsiBlast_PDB 87.6531%-118 - C2 -4ZWC 3.8 GTR3_HUMAN
41 Fugue 86.6730%-141 * C2 *4GC0 4.3 XYLE_ECOLI
22 HHSearch 85.6031%-124 - C2 -4GC0 4.3 XYLE_ECOLI
21 HHSearch 85.3931%-126 - C2 -4GBY 3.3 XYLE_ECOLI
10 PsiBlast_PDB 85.2228%-114 - C2 -5EQG 4.1 GTR1_HUMAN
11 PsiBlast_PDB 84.8528%-116 - C2 -5EQH 6.1 GTR1_HUMAN
12 PsiBlast_PDB 84.6628%-116 - C2 -5EQI 6.1 GTR1_HUMAN
9 PsiBlast_PDB 84.6129%-134 - C2 -4GC0 4.3 XYLE_ECOLI
20 HHSearch 84.4330%-121 - C2 -4ZW9 3.3 GTR3_HUMAN
7 PsiBlast_PDB 83.6929%-134 - C2 -4GBY 3.3 XYLE_ECOLI
8 PsiBlast_PDB 83.4129%-131 - C2 -4GBZ 3.6 XYLE_ECOLI
13 PsiBlast_PDB 83.2428%-112 - C2 -4PYP 4.6 GTR1_HUMAN


Add PDB User Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]



MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]



5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]



5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]



GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]



XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]



5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]
51 -100%-170 - C2 -U051 4.0
52 -100%-153 - C2 -U052 2.8