@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GTR9_HUMAN: (2018-03-06 )
MARKQNRNSKELGLVPLTDDTSHAGPPGPGRALLECDHLRSGVPGGRRRKDWSCSLLVASLAGAFGSSFLYGYNLSVVNAPTPYIKAFYNESWERRHGRPIDPDTLTLLWSVTVSIFAIGGLVGTLIVKMIGKVLGRKHTLLANNGFAISAALLMACSLQAGAFEMLIVGRFIMGIDGGVALSVLPMYLSEISPKEIRGSLGQVTAIFICIGVFTGQLLGLPELLGKESTWPYLFGVIVVPAVVQLLSLPFLPDSPRYLLLEKHNEARAVKAFQTFLGKADVSQEVEEVLAESRVQRSIRLVSVLELLRAPYVRWQVVTVIVTMACYQLCGLNAIWFYTNSIFGKAGIPPAKIPYVTLSTGGIETLAAVFSGLVIEHLGRRPLLIGGFGLMGLFFGTLTITLTLQDHAPWVPYLSIVGILAIIASFCSGPGGIPFILTGEFFQQSQRPAAFIIAGTVNWLSNFAVGLLFPFIQKSLDTYCFLVFATICITGAIYLYFVLPETKNRTYAEISQAFSKRNKAYPPEEKIDSAVTDGKINGRP

Atome Classification :

(12 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]




MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]




BNG_A_2(4PYP)
GTR1_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




5RH_A_2(5EQI)
GTR1_HUMAN
[Raw transfer]




XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




5RF_A_2(5EQH)
GTR1_HUMAN
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




5RE_A_2(5EQG)
GTR1_HUMAN
[Raw transfer]




4 PsiBlast_PDB 94.1939%-144 - C3 -5EQH 5.7 GTR1_HUMAN
5 PsiBlast_PDB 93.2339%-145 - C3 -5EQI 5.7 GTR1_HUMAN
3 PsiBlast_PDB 93.1239%-142 - C3 -5EQG 4.7 GTR1_HUMAN
6 PsiBlast_PDB 92.8138%-141 - C3 -4PYP 3.6 GTR1_HUMAN
18 HHSearch 92.6439%-151 - C3 -5EQG 4.7 GTR1_HUMAN
20 HHSearch 85.1737%-133 - C3 -4ZW9 1.4 GTR3_HUMAN
7 PsiBlast_PDB 84.6437%-133 - C3 -4ZW9 1.4 GTR3_HUMAN
8 PsiBlast_PDB 84.2337%-132 - C3 -4ZWB 1.0 GTR3_HUMAN
9 PsiBlast_PDB 83.8137%-138 - C3 -4ZWC 1.7 GTR3_HUMAN
42 Fugue 67.7321% -87 - C3 -4GC0 3.3 XYLE_ECOLI
23 HHSearch 63.7622% -88 - C3 -4GC0 3.3 XYLE_ECOLI
22 HHSearch 63.4722% -88 - C3 -4GBY 2.2 XYLE_ECOLI