@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_05_0550: (2018-03-07 )
MRSSDPTPARPTGFQRYQRQHKVGEGSYGKVFLCTDVVEGGTVAVKTSQWNSGEEGLSVSSIREVSLLKEIRHPNVVRLLDLFTEEKKLCIVFERMEKDLRSVLSTRQTPIVGRKLKHMMYQLLSALHACHSRRVVHRDIKPGNILVSADEQTVKLADFGMGRAFGLALQSYTYRIATLYYRAPEVLLGDRYYLPSVDMWSMGCVMAELALRRALFRGEGEYSQLITIFGIMGTPNERVWPGVSRLPHYNAEFPSWVPTSLEKYIPTLDPEGIALLKAMLRYDPQRRITALQAMQHPFFDDVRDECEARLQQQQP

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

X14_A_4(3QRT)
CDK2_HUMAN
[Raw transfer]



SU9_A_4(3PY0)
CDK2_HUMAN
[Raw transfer]



JWS_A_4(3PXZ)
CDK2_HUMAN
[Raw transfer]



X11_A_3(3QQJ)
CDK2_HUMAN
[Raw transfer]



ADP_A_9(3QHW)
CDK2_HUMAN
[Raw transfer]



X01_A_3(3QL8)
CDK2_HUMAN
[Raw transfer]



JWS_A_2(3PXY)
CDK2_HUMAN
[Raw transfer]



X0A_A_6(3QQH)
CDK2_HUMAN
[Raw transfer]



919_B_6(5G6V)
CDK16_HUMAN
[Raw transfer]



ADP_A_4(3NIZ)
?
[Raw transfer]



1CK_A_2(4EK4)
CDK2_HUMAN
[Raw transfer]



X03_A_2(3QQL)
CDK2_HUMAN
[Raw transfer]



X06_A_3(3QQG)
CDK2_HUMAN
[Raw transfer]



X6A_A_3(3QWJ)
CDK2_HUMAN
[Raw transfer]



AMP_A_2(3GC0)
?
[Raw transfer]



X19_A_3(3QRU)
CDK2_HUMAN
[Raw transfer]



Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]



RRC_A_5(1UNL)
CDK5_HUMAN
[Raw transfer]



X07_A_3(3QQF)
CDK2_HUMAN
[Raw transfer]



2AN_A_5(3PXQ)
CDK2_HUMAN
[Raw transfer]



2AN_A_5(3PY1)
CDK2_HUMAN
[Raw transfer]



MPD_A_4(4YC3)
CDK1_HUMAN
[Raw transfer]



EDO_A_5(5G6V)
CDK16_HUMAN
[Raw transfer]



MGF_A_12(3QHW)
CDK2_HUMAN
[Raw transfer]
13 PsiBlast_PDB 86.6046% -67 - C1 -3QQF 4.4 CDK2_HUMAN
17 PsiBlast_PDB 84.6046% -61 - C1 -3QQL 4.2 CDK2_HUMAN
7 PsiBlast_PDB 84.6046% -65 - C1 -3PXR - CDK2_HUMAN -
29 HHSearch 84.5141%-126 - C1 -1V0B - CDC2H_PLAFK -
43 HHSearch 84.0745% -98 - C1 -3NIZ 4.6 ?
15 PsiBlast_PDB 84.0546% -67 - C1 -3QQH 7.2 CDK2_HUMAN
16 PsiBlast_PDB 83.8246% -69 - C1 -3QQJ 5.4 CDK2_HUMAN
21 HHSearch 83.4846% -64 - C1 -4EK4 3.9 CDK2_HUMAN
1 PsiBlast_PDB 83.2447% -63 - C1 -3PJ8 - CDK2_HUMAN -
8 PsiBlast_PDB 83.2146% -68 - C1 -3PXY 5.1 CDK2_HUMAN
14 PsiBlast_PDB 82.9846% -64 - C1 -3QQG 5.3 CDK2_HUMAN
12 PsiBlast_PDB 82.9646% -67 - C1 -3QL8 4.7 CDK2_HUMAN
20 PsiBlast_PDB 82.4046% -67 - C1 -3QWJ 4.9 CDK2_HUMAN
10 PsiBlast_PDB 82.0846% -70 - C1 -3PY0 5.3 CDK2_HUMAN
22 HHSearch 81.4646% -55 - C1 -3QHW 6.9 CDK2_HUMAN
4 PsiBlast_PDB 81.4647% -58 - C1 -2DS1 - CDK2_HUMAN -
18 PsiBlast_PDB 81.0046% -60 - C1 -3QRT 6.4 CDK2_HUMAN
9 PsiBlast_PDB 79.6746% -60 - C1 -3PXZ 5.3 CDK2_HUMAN
3 PsiBlast_PDB 79.6047% -59 - C1 -1GIJ - CDK2_HUMAN -
2 PsiBlast_PDB 79.5847% -67 - C1 -1GII - CDK2_HUMAN -
6 PsiBlast_PDB 78.4646% -56 - C1 -3PXQ 5.9 CDK2_HUMAN
11 PsiBlast_PDB 76.5846% -56 - C1 -3PY1 6.1 CDK2_HUMAN
34 HHSearch 70.1238% -87 - C1 -5G6V 3.0 CDK16_HUMAN
36 HHSearch 69.8140% -83 - C1 -4AU8 5.1 CDK5_HUMAN
31 HHSearch 67.6540% -88 - C1 -1UNL 6.8 CDK5_HUMAN