@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_09_0270: (2018-03-08 )
MGTSGFSRLRSLTPTPYPGTQGSPYRRHRFVGVNLPGAPPPSIDFSSIQRTVKEVYEVHEKLSEGTYGEVFKGVDKRTGAAVALKRIKMLSTHQGFPQTSLREVIALRHIQNQRERLEERLRNDAHHRGAVAITDPLAEVSQLCDVLLYDRQQRDIVLVFAYATASLAGLCRRQFAFTPSEMALLMKKLLIAVRKLHEMRIIHRDIKSDNVLVTSEGEVQLTDFGLCSIAAPGSSRSGTHVWRTPSVITLAYRPPEMLLGSTAYDEKVDVWSLGCLLAQMFLLEPPFYRHRAQAQQQQQRAPERSAATELEQLSRITEILGPLPPVSVYHPDSCQHMRVLEQLEVQGRLAEAGRAAQPANWGRLQTIFEPSFLYQQFHGFRGWFEAELGRSRHQPHRRPTQACMDVLCAALQLDPQQRPTAAELLRMPYFTTLDDAPLLGSYQRVLPVTPEREAEVRRGFMTKVQRCGDSHTQRRPHQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_5(4CXA)
CDK12_HUMAN
[Raw transfer]



ANP_A_4(3MIA)
CDK9_HUMAN
[Raw transfer]



ADP_A_5(5EFQ)
CDK13_HUMAN
[Raw transfer]



ADP_A_4(3NIZ)
?
[Raw transfer]



AMP_A_2(3GC0)
?
[Raw transfer]



T3C_A_3(4BCG)
CDK9_HUMAN
[Raw transfer]



T9N_A_3(4BCJ)
CDK9_HUMAN
[Raw transfer]



T3E_A_3(4BCI)
CDK9_HUMAN
[Raw transfer]



SLQ_A_3(3LQ5)
CDK9_HUMAN
[Raw transfer]



5I1_C_5(5ACB)
CDK12_HUMAN
[Raw transfer]



RFZ_A_5(3MY1)
CDK9_HUMAN
[Raw transfer]



EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]



AF3_A_6(4NST)
CDK12_HUMAN
[Raw transfer]
18 PsiBlast_PDB 84.1928% -80 - C1 -3NIZ 6.1 ?
19 PsiBlast_PDB 77.7428% -86 - C1 -2QKR - ? -
22 HHSearch 77.1325% -57 - C1 -5BYZ - MK07_HUMAN -
45 HHSearch 75.2430% -65 - C1 -1UA2 - CDK7_HUMAN -
8 PsiBlast_PDB 71.3931% -68 - C1 -3MIA 4.7 CDK9_HUMAN
9 PsiBlast_PDB 70.6731% -64 - C1 -4IMY - CDK9_HUMAN -
14 PsiBlast_PDB 70.5131% -70 - C1 -4BCI 6.7 CDK9_HUMAN
1 PsiBlast_PDB 70.4632% -63 - C1 -4CXA 6.0 CDK12_HUMAN
15 PsiBlast_PDB 70.3631% -67 - C1 -4BCJ 6.6 CDK9_HUMAN
4 PsiBlast_PDB 70.0232% -59 - C1 -4NST 2.7 CDK12_HUMAN
5 PsiBlast_PDB 69.9932% -60 - C1 -4UN0 - CDK12_HUMAN -
10 PsiBlast_PDB 69.9031% -58 - C1 -4OGR - CDK9_HUMAN -
36 HHSearch 69.7735%-131 - C1 -3OZ6 - ? -
6 PsiBlast_PDB 69.5331% -71 - C1 -4EC8 - CDK9_HUMAN -
3 PsiBlast_PDB 69.3432% -62 - C1 -5EFQ 6.8 CDK13_HUMAN
7 PsiBlast_PDB 69.3131% -69 - C1 -3MI9 - CDK9_HUMAN -
12 PsiBlast_PDB 69.1031% -67 - C1 -3MY1 5.2 CDK9_HUMAN
16 PsiBlast_PDB 69.0931% -67 - C1 -4BCG 6.1 CDK9_HUMAN
2 PsiBlast_PDB 69.0732% -63 - C1 -5ACB 7.3 CDK12_HUMAN
11 PsiBlast_PDB 68.5731% -68 - C1 -5L1Z - CDK9_HUMAN -