@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_14_1510: (2018-03-08 )
MEKYTKVKNIGKGNMGTCTLARNNEDGKYYVIKQVDLTRMSKKDRQQSLNEARVLSSLRHPNIINYVDSFLARKSDNLCIVMEYAESGDVCTRLKKNYGVNVPERQVLDWLIQLVLSLDYVHQRKILHRDVKTQNIFLTHENLIKLGDFGIARTLANTYDQAQTFVGTPYYLSPELILEQPYDHRSDVWALGVVLYEMLTLKHPFNAKDMKGLLQRILAVHYDPLPTVYSAELRDIVARMLVRDPAGRIKLDDILQIPIVRERIRQWLKEPDVVPQHYVRSLCKHHLLPDFQDEATAVPSTRSAARAAAAMAHEEWRTTSEATPAQTDGDVFARNDTGTRPHATPGGPFSIPSTAARAAASACTSSADNGSSDGVRPSMPALKPYSNLPQLGVAPPQLYAPQLPQIYPRVQSNNRAPSPSRLFRSPFSTPSLARSAALPISRQQGDLVGQSSPAPLPFQRPSARAKAPSRPYARPYVAQPHLSPSPAYLVAANPRKNPSDMRRQQGSRPSGPYLNPLFSAPRQMAPGCRPLAPPLPPPPDIKAMLQRAAAERARR

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]



5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]



XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]



30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]



BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]



WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]



OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]



SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]



VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]



EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]



4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]



WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]



430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]



ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]



ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]



GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]



NU6_A_2(5M51)
NEK2_HUMAN
[Raw transfer]



WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]



CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]



5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]



CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]



EDO_A_5(2W5A)
NEK2_HUMAN
[Raw transfer]
1 PsiBlast_PDB 87.3544%-139 - C1 -4APC - NEK1_HUMAN -
2 PsiBlast_PDB 86.2044%-139 - C1 -4B9D 4.9 NEK1_HUMAN
23 HHSearch 86.1146%-137 - C1 -4B9D 6.2 NEK1_HUMAN
24 HHSearch 85.7746%-136 - C1 -4APC - NEK1_HUMAN -
51 Fugue 70.7517% - - C1 -3QA8 - ? -
38 HHSearch 70.3940% -35 - C1 -2W5A 2.3 NEK2_HUMAN
3 PsiBlast_PDB 69.6038% -51 - C1 -2W5A 6.3 NEK2_HUMAN
35 HHSearch 69.2539% -33 - C1 -2W5B - NEK2_HUMAN -
20 PsiBlast_PDB 68.2738% -44 - C1 -2W5B 5.1 NEK2_HUMAN
14 PsiBlast_PDB 67.5738% -55 - C1 -2XNM 8.0 NEK2_HUMAN
18 PsiBlast_PDB 66.6538% -51 - C1 -5M51 6.9 NEK2_HUMAN
11 PsiBlast_PDB 66.0238% -53 - C1 -2XKD 6.8 NEK2_HUMAN
19 PsiBlast_PDB 64.9038% -60 - C1 -2JAV 6.7 NEK2_HUMAN
12 PsiBlast_PDB 64.0738% -45 - C1 -2XKF 6.5 NEK2_HUMAN
15 PsiBlast_PDB 64.0238% -50 - C1 -2XNN 6.4 NEK2_HUMAN
8 PsiBlast_PDB 63.1938% -49 - C1 -2XK7 6.3 NEK2_HUMAN
13 PsiBlast_PDB 63.0338% -50 - C1 -2XKE 6.4 NEK2_HUMAN
16 PsiBlast_PDB 62.3638% -42 - C1 -2XNO 6.7 NEK2_HUMAN
6 PsiBlast_PDB 62.1138% -47 - C1 -2XK4 7.3 NEK2_HUMAN
17 PsiBlast_PDB 62.0938% -40 - C1 -2XNP 9.3 NEK2_HUMAN
5 PsiBlast_PDB 60.2838% -36 - C1 -2XK3 6.1 NEK2_HUMAN