@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_26_1710: (2018-03-10 )
MLAHPILASEDDEEYVIRVIFCLPALLDAYFDAVETICAEPSPPPESKTRADILHLTIQQRLLILGRVPPSTFRHFDEVSGTETEDKELPKLIDQLRHVFLENKVDIGPQALLWRKRSLSLARECSDHMNRCRVRFSLGRKVRRELVAFGSAPYAFSMISFGLIVIFSCSALVIIPALQAPLASGLAVGCVACVLLVLSASLVSFNFFTAVRSLHILYSQLFHEYLIAGGSPSDILLNSLQEPCFKPRGKDGPRDSGTKRLEMGRETKTGYYTIPYGGENRIGYIEGKQLNAQVVMIAFDSNYQITWWNNAAEVMTGFLQDGCIGKPLNELVQCFNDEDVCSLIKNTRRGNLLKIKLRSLTAAPTTLSTVVAPILNCDSKPIGNVLICANSLDNLREYRIYMHNYQVSETIGALSFLSERSSLSHEDSTLVNSLSRFVKNGLANHVETLAREMESDWDWTSVEQLLGRALGQRIGLHEVIVDPLFPPTLCVNPDVAKTFGTVVGLANGRCTVTLQMLNLTGNVFSLAVTVLLGPKCRPWDQAQLEQQLEQLLRSTAGSVYLLEERVVLHFPCQVAPILDDGDEGDANPNSDQALQITQARAIINCTVNVVTAITNMVDQHNLSLILLKTMFVSLASVRERSDLEKRLSARPCDVDVIICDSEWLSSSRDLLMNNDHGAMVIPLIDAQMPVPADVQHAICMPLVRRDVQQLILEVGKAVSMKKNAISAREERERILTLRQDSPWTRGKLLGRGSYGAVYEATSDLTGGKMAVKMFYFSQNVESSISTLLNEVSIMCSLNHPNIVHYFHCERKDNNVSLFMELCEASLTDIIVGRRQKPAHLSVVQIIRQVLTAIAYLHSRGIAHRDVKPQNILLKGETVKLTDFGTAIQGNAGKEVRGTFRYMAPEVYKGDPHSLSCDIWSIGCLVCELFACPTPFMENSSLLGEMTSTVDYLTRVPQNPVLIDFLEKCFQLDPERRWGAGDLLMHPLLSGNAAASSLVKLETIFDAKHSNPLDPSSQSVFSLRSA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_7(2RIO)
IRE1_YEAST
[Raw transfer]



ATP_A_9(1U5R)
TAOK2_RAT
[Raw transfer]



ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]



X4Z_A_3(4O0R)
PAK1_HUMAN
[Raw transfer]



4T3_A_3(4ZY4)
PAK1_HUMAN
[Raw transfer]



STU_A_2(3FME)
MP2K6_HUMAN
[Raw transfer]



ATP_A_2(3Q53)
PAK1_HUMAN
[Raw transfer]



IPV_A_3(5KBQ)
PAK1_HUMAN
[Raw transfer]



IPW_A_3(5KBR)
PAK1_HUMAN
[Raw transfer]



2OL_A_3(4O0T)
PAK1_HUMAN
[Raw transfer]



GOL_A_6(4GV1)
AKT1_HUMAN
[Raw transfer]



GOL_A_4(4ZLO)
PAK1_HUMAN
[Raw transfer]



4PV_A_3(4ZLO)
PAK1_HUMAN
[Raw transfer]



DMS_A_3(5DFP)
PAK1_HUMAN
[Raw transfer]
29 HHSearch 73.0027% -47 - C1 -1UNL - CDK5_HUMAN -
31 HHSearch 72.5828% -70 - C1 -4BGQ - CDKL5_HUMAN -
12 PsiBlast_PDB 71.2432% -42 - C1 -4O0R 6.6 PAK1_HUMAN
15 PsiBlast_PDB 71.0231% -47 - C1 -3Q53 3.1 PAK1_HUMAN
13 PsiBlast_PDB 70.8132% -45 - C1 -4O0T 7.4 PAK1_HUMAN
7 PsiBlast_PDB 70.3532% -48 - C1 -4DAW - PAK1_HUMAN -
11 PsiBlast_PDB 69.3132% -41 - C1 -1YHV - ? -
1 PsiBlast_PDB 68.9032% -58 - C1 -4ZJI - PAK1_HUMAN -
43 HHSearch 68.8933% -63 - C1 -4XBR - INKA1_HUMAN (first) -
8 PsiBlast_PDB 68.8732% -44 - C1 -5DFP 3.3 PAK1_HUMAN
9 PsiBlast_PDB 68.0232% -46 - C1 -5DEY - PAK1_HUMAN -
17 PsiBlast_PDB 67.9732% -41 - C1 -1YHW - PAK1_HUMAN -
18 PsiBlast_PDB 67.8532% -39 - C1 -5KBQ 6.2 PAK1_HUMAN
6 PsiBlast_PDB 67.7032% -45 - C1 -3FY0 - PAK1_HUMAN -
5 PsiBlast_PDB 67.6832% -43 - C1 -3FXZ - ? -
4 PsiBlast_PDB 67.0932% -42 - C1 -4EQC - PAK1_HUMAN -
45 HHSearch 66.8427% -40 - C1 -1U5R 4.7 TAOK2_RAT
10 PsiBlast_PDB 66.6432% -40 - C1 -5DEW - PAK1_HUMAN -
51 Fugue 66.5917% 14 - C1 -2ACX - GRK6_HUMAN -
32 HHSearch 63.8229% -40 - C1 -3C0G - CSKP_HUMAN -
3 PsiBlast_PDB 63.0932% -46 - C1 -4ZLO 5.7 PAK1_HUMAN