@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_35_3220: (2018-03-13 )
MAHLDSDAITPHSPRSQPRILAGHIGEEKDAIDRDGMQPGGDVGNGAASILRRRWMYDGGRKIAPFLSARHTHQESKEKVEIGGDSSTVVVRPNVIAATPRENRSPLDRAITPPSPLQLLPKTILPASVVASTSLARQHGVRGNVRPVDEASTYNDEQANPEEHSSPSCSIIASSSSGGGDFSLEADNDAQLSNAPCHAPLGRRLTQLELPFPQVTLSSLLQSNQSTSADGVDTSAGSQDTRLSSKRSTASRRCYVPGRASRLHSNTLVSEGGGGMLSALFSNTSRATTQASEVTTRAPNESLHGLDTSYMRASLLSLSSETESASEGTSLTPVQQHDESITYRSSLPPPPPPPPVRTRTFTLAEATENAAHAAAKHSSTRLTPSALMTPPLMAVEPRSRLPSFRTRNPLMQPRQLSDGHLGEHAVAPSQLHDEDAPAAAGTPRSCYRGPRSALLRGCADRRQSASRTPPIAVLVPLPPKSEELAPAPAPASTPATASPPPTQPLDSDTYAVNANSLASEMSFRYRARPSPRAQQLDPASVLEPRASLCVSPLHPSLSQVYVLTPRPQPPRSTPARSSPPRSGDPTLLEYVASLKPPRGSCSIRRALLSVGVALCAVPLCVAILLFGLHYWAVTLQEKSYAEALLHARMGTMLKVDLELLLSILLSIVVVGGGSGTVIYVVLYRLAIRHQVRAFALCVRLADTLLPLDVHHLAAEDSEGRQDIAMPIDAAAAAAQQADNGDSRAQWFSPFVARWHEEVSRLVKLLTCPIEVSQAEWRSFLFSERRSLALPNEGTNGSGDLPVTETTLADGPFHNSNNRRSLPFGVQASVPMTENEPWPPHEAQPGSRYQMSEAVFSRRPQHPVDVSKRQEAVTVVVCRLMAPAELLVEQRPLTQAQLKELQRLSNEFHQRLRTVPRTSCAAVTEVGVSEVVFSFNTFSPLPSLVASPAAVALAVVAQKALVEWSPTYRGTPVQWGIAVHRFDAYICPTRGMQGRLYVSFGTVEYDFARQLAELAALFDYGALCHAGFLADASCESQCLPVDYVMDLRQQAFLVYQLHDGDVDREQRLQMNSAIASMRNGEYKAAADALGMWRRKSGGCSGLPRTAAHLRYVAGFLERAARKRRLRVSEATVEAVTAPSFTCAVEGVAEWAAESLLTSYFRPPPVWEEEEAPRAPSPDLLRAPAILATSGGGSCGLRKRECGSSNVLVPFSPQPSRGAAGELATFFRSLMRRSYQARTRYVLSAEQREGQVGSRAMGEPPHQPREVLAAIEGDARPPSSLQRCYGLPSPGTESVSGERNVLEDGSAPLSPRDNVTGCSSSFHATRSVFEASTPTTTFPDVTCGDRKWAALALLTEPDQSTVTVTASRPRLFSNSWSLAESGVPEMPTLTPLTSGVLRSSQSDVRRQRHASILISAAKKEDDAAGPVAACASAKDNATLRSSRGRRDSGGCRSERPRGRHGSQFTTEVPTSDELSSRLLGHQCVSQLTDTTIARFPSEVSHESLSARSGSVRRRASASTAAASSVLPLFADSMVPFTVQDRTEARSEAETACEADLNQELSMMSVAQRSRSRRSHRATAQPSSVVCSCTRRIDTSSSNTVMVFQGFHPDGYLVVVKRADRRAAKQVAQLRNEVDLLRELHHRNVVNIVSAWKDDEAVYFAMEYACETLATVLQKFKVLLPGVVRFYAREVLNALVYLHRDCGIIHRDLSPNNVIITNTTDRSRVKLIDFGRSIMGPHFCSGSSGMSTTVPGNASLEFTEQHSSRNKVSVTDVPTSVVGTPLFMSPQACRGLAHPTSDIWSLGIIVHLCLTGTYPYPPETFTDPETFVANIGSGRLTPVIADTCEMTGEARSFIEQCLTLSHTERPSAAALLKHGFVER

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_4(2J0I)

[Raw transfer]



TRS_A_4(2F57)
PAK5_HUMAN
[Raw transfer]



GOL_A_3(4APP)

[Raw transfer]



EDO_A_5(2J0I)

[Raw transfer]



GOL_A_2(2X4Z)

[Raw transfer]
12 PsiBlast_PDB 87.2828%-104 - C2 -2CDZ - -
2 PsiBlast_PDB 87.0528%-105 - C2 -4FIF - PAK4_HUMAN -
1 PsiBlast_PDB 86.6028%-105 - C2 -4FIE - PAK4_HUMAN -
19 PsiBlast_PDB 86.5528%-112 - C2 -2F57 3.7 PAK5_HUMAN
3 PsiBlast_PDB 86.5328%-105 - C2 -4FIG - ? -
14 PsiBlast_PDB 86.4128%-102 - C2 -2Q0N - -
16 PsiBlast_PDB 86.3728%-101 - C2 -4APP 3.0
15 PsiBlast_PDB 85.8428%-106 - C2 -2X4Z 2.8
9 PsiBlast_PDB 85.3328%-110 - C2 -4XBU - PAK4_HUMAN -
7 PsiBlast_PDB 85.1428%-107 - C2 -4JDH - ? -
17 PsiBlast_PDB 84.2028%-110 - C2 -4NJD - -
13 PsiBlast_PDB 84.0728%-111 - C2 -2J0I 3.5
8 PsiBlast_PDB 84.0728%-107 - C2 -4JDI - PAK4_HUMAN -
20 PsiBlast_PDB 83.8428%-108 - C2 -4O0V - -
18 PsiBlast_PDB 83.8028%-111 - C2 -5I0B - PAK4_HUMAN -
5 PsiBlast_PDB 83.6928%-104 - C2 -4FII - PAK4_HUMAN -
11 PsiBlast_PDB 83.3128%-100 - C2 -4XBR - INKA1_HUMAN (first) -
48 Fugue 82.6318% -44 - C2 -1KOB - ? -
24 HHSearch 80.5430% -29 - C2 -4XBR - INKA1_HUMAN (first) -
47 Fugue 80.2320% -35 - C2 -1TKI - TITIN_HUMAN -