@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_36_4760: (2018-03-13 )
MALVKTKLAAAPQPSRTPTPGSSPKEWTPPTHTHESPEHLSTDEPDVLVPAHKYVYDVKTCAWKGVDTMLRVLHPNRGLSQGTMRVCFALEELDETGFSSRMVAKMFRHNISKVVESDYFNEGEAQCICGIFAEKFNRVQVPAGFQRHIVSFLQCETVRIKLSEVPEAYQHKRSGFFSYRTTDSADILFTMEPRLAGNFTKYTNNFGDVYDGFERRQSLEEEKKRHRVLMAVEAFSHFTLVESGGSMLVCDLQGVNDFLTDPQIHTEDGKGLGMGNMGQDGIRKWMEAHVCNEVCRAIMLEPLSKGLRNFTRTAENESRVSYYQILRAKLRSQTPVRPEDIIPLSKPLSLMSDDERLEYAMRLSALLSE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_8(3LMI)
MHCKA_DICDI
[Raw transfer]



ANP_A_3(5E9E)
MHCKA_DICDI
[Raw transfer]



ADP_A_6(3PDT)

[Raw transfer]



AMP_A_8(3LKM)

[Raw transfer]



ATP_A_5(4ZS4)
MHCKA_DICDI
[Raw transfer]



ACP_A_4(3LLA)
MHCKA_DICDI
[Raw transfer]



AMP_A_6(5DYJ)
MHCKA_DICDI
[Raw transfer]



ADN_A_4(4ZME)
MHCKA_DICDI
[Raw transfer]



ADP_A_4(4NL0)
?
[Raw transfer]



PEG_A_4(4KUJ)
?
[Raw transfer]
18 HHSearch 65.3632% 6 - C3 -3PDT - -
17 HHSearch 64.4331% 4 - C3 -3LKM - -
28 Fugue 61.9922% -48 - C3 -1IA9 - TRPM7_MOUSE -
21 HHSearch 58.0727% -34 - C3 -4KUJ - ? -
8 PsiBlast_PDB 57.9430% -0 - C3 -4ZS4 4.7 MHCKA_DICDI
3 PsiBlast_PDB 57.1530% 5 - C3 -5E9E 4.8 MHCKA_DICDI
9 PsiBlast_PDB 56.8630% -4 - C3 -4ZME 4.3 MHCKA_DICDI
2 PsiBlast_PDB 56.6230% 1 - C3 -3LLA 4.7 MHCKA_DICDI
10 PsiBlast_PDB 56.2930% -4 - C3 -4ZMF - MHCKA_DICDI -
19 HHSearch 56.0924% -12 - C3 -1IAH - -
6 PsiBlast_PDB 55.5330% 3 - C3 -5DYJ 4.6 MHCKA_DICDI
1 PsiBlast_PDB 55.0930% 5 - C3 -3LKM 4.8
4 PsiBlast_PDB 54.9830% 6 - C3 -3PDT 4.9
5 PsiBlast_PDB 54.5430% 4 - C3 -5E4H - MHCKA_DICDI -
7 PsiBlast_PDB 54.1430% -4 - C3 -3LMI 4.6 MHCKA_DICDI
27 Fugue 54.0126% 33 - C3 -3LKM - -
20 HHSearch 53.1024% -11 - C3 -1IA9 - TRPM7_MOUSE -
11 PsiBlast_PDB 49.9328% -40 - C3 -4KUJ 2.5 ?
12 PsiBlast_PDB 47.6428% -36 - C3 -4NL0 4.0 ?
31 Fugue 45.7219% 8 - C3 -4XGC - ? -