@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_36_4770: (2018-03-13 )
MEKESLEAPNSANGSFSVVNHDLVKPSDARSKTNSNATASATRPSRDRADSVRVSRQHMYVDIDQVGFCNDATSMVWVPNTGGPTSSLRTNDKASSTKGGDGFAVPSSQTRIPAIALAGYVRSSIVGDAAPVIVRGHKYVFNNSTRRWLAHPITVRVLHHNRGIHQDKYFATFAMELLDPVKPATPMLAKVYRHNIDLVSETDYYSLGQAQALCEEFAREYTCTAARSHYVKFHLPLLTNRVVVRLDMDSVLDPAVRTARKGFFSYRTQDTRQVMFFMEPNTVACEALGISFASREVDEGKCYSRGDAMWSRDIYRDIADGFSHFTYVRSRACMVAHGFVRSNGYLLDPLFHTTDSERFTMGDAGRSAMEDWVKRHRCGDTCRALGISNFNNDGERVKKAAACVNPLDMEENHYTDYLRSVRQMRVIVHMDAAQILCDYKKDSAVDTVSESSDFTPTMAALQPMPISSVSRKVTCDAVKYVFLPTRAKWMEVPMRLTVAASAVPDTVDGTYAFFAIEEVREGGRPVPMRARFLLRPEARDADYYHFGDAYCVCVTLGQVFREYCANNVFARDLDFYAAYAVRVPQANIPDYIKAAMHDSDFFARTTADSGDVMFVAEAEFQPFSPRCLPNADGVSKDAEGFDDLALRNVVDAFSHFTLHKSGNHLLVCQFKCQDGLLMHPNINTSSGCGFETLNDGQAGIDAWVRKHTCNEVCKFLGMEPLPRQLKLYDISSSPLMRYIRHMQEHKMDSDEMLELAPPSRRMSDRMLPAASDAAASQSERARASSSATASTATAAVASFVRPTPPNSEETMLRPWVKRGCKASAASAKGTAAQRRTLTQRELMRLQSKGIDTKYIIPATRYDLNIDDLTWTSKRIFVRIVNPERGIGQGGMRVCFEITDVDPDACAESVMVAKMYRRTIKNVVEKDYFASVMVQKLSSLFAKDFNKERNEDGPLLLNVLDGAVIALDRADLHPELLAQRTGFFSYRTEDTERVVFCVEQRLLGRFTKYNGNMGEAYPTNECRLSPPAARERTMVFEAVEALSHYSLERSEGGLLVCDMQGVRNDLTDLEVHSYDGQSLDIGNFGARGIQKFALRHRCTSVCKSLNLRNLRDRHFTVTDDVKTKNRFVALFERIKEIGNMEE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(5E9E)
MHCKA_DICDI
[Raw transfer]



AMP_A_8(3LKM)

[Raw transfer]



ADP_A_6(3PDT)

[Raw transfer]



ACP_A_4(3LLA)
MHCKA_DICDI
[Raw transfer]



AMP_A_6(5DYJ)
MHCKA_DICDI
[Raw transfer]



ADN_A_4(4ZME)
MHCKA_DICDI
[Raw transfer]
37 Fugue 48.9017% 14 - C1 -4IGL - ? -
36 Fugue 45.8016% -0 * C2 *3UGM - PTHX1_XANOP -
22 HHSearch 42.4424% 3 - C3 -3PDT - -
26 HHSearch 41.6120% 4 - C3 -3PDT - -
34 Fugue 40.9438%-384 - C3 -1ZW2 - -
24 HHSearch 40.8724% 25 - C3 -1IAH - -
21 HHSearch 40.1923% 13 - C3 -3LKM - -
25 HHSearch 39.9124% 36 - C3 -1IA9 - TRPM7_MOUSE -
23 HHSearch 39.3719% -4 - C3 -3LKM - -
29 HHSearch 38.4623% -35 - C3 -4KUJ - ? -
32 Fugue 38.0621% 27 - C3 -1IA9 - TRPM7_MOUSE -
35 Fugue 35.0215% -16 - C3 -4XHJ - GH_VZVO -
30 HHSearch 33.3416% -45 - C3 -4KUJ - ? -
4 PsiBlast_PDB 33.3028% 33 - C3 -5E9E 4.8 MHCKA_DICDI
5 PsiBlast_PDB 32.7528% 32 - C3 -3PDT 4.8
3 PsiBlast_PDB 32.7028% 28 - C3 -3LLA 4.7 MHCKA_DICDI
2 PsiBlast_PDB 32.5628% 31 - C3 -3LKM 4.8
7 PsiBlast_PDB 32.4027% 25 - C3 -4ZMF - MHCKA_DICDI -
27 HHSearch 32.2715% -12 - C3 -1IAH - -
31 Fugue 32.1819% 11 - C3 -3LKM - -