@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_36_4780: (2018-03-13 )
MNPATQDAAAAEEESPVVCTAKKYIFDLHSYAWKESDCLIRIPRPHKGMGHGGMRVCYAVEDVDEEGAGTPMVAKMFRRNISDVVEKDYFNEGAAQCMCEEFANNFNRIHLTNIHKPNISFLQCYVVRIPRDSIPVASQKKRTGFFSYKTQDTGEVMFVMEPMLSGKFTKYNSNYGETYREDKKAALTSSEAKRRTEVFEAAEAFSHFTLVESGGSMLVCDLQGVNDFLTDPQIHTEDGKGLGMGNMGQEGIDKWIEKHECNEICRALGLQPLLGAVPSSTACAKEENLNLGLRAQLQSQNPVRLRDLVPLTKPLEEMTEAERIEYALKVSRLTD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(5E9E)
MHCKA_DICDI
[Raw transfer]



ATP_A_8(3LMI)
MHCKA_DICDI
[Raw transfer]



ATP_A_5(4ZS4)
MHCKA_DICDI
[Raw transfer]



AMP_A_8(3LKM)

[Raw transfer]



ADP_A_6(3PDT)

[Raw transfer]



AMP_A_6(5DYJ)
MHCKA_DICDI
[Raw transfer]



ACP_A_4(3LLA)
MHCKA_DICDI
[Raw transfer]



ADP_A_4(4NL0)
?
[Raw transfer]



ADN_A_4(4ZME)
MHCKA_DICDI
[Raw transfer]



PEG_A_4(4KUJ)
?
[Raw transfer]
18 HHSearch 77.6234% 15 - C3 -3LKM - -
19 HHSearch 77.6133% 20 - C3 -3PDT - -
20 HHSearch 73.7625% 1 * C3 *1IAH - -
6 PsiBlast_PDB 69.4534% 8 - C3 -4ZME 4.3 MHCKA_DICDI
3 PsiBlast_PDB 69.3534% 14 - C3 -5E9E 4.8 MHCKA_DICDI
29 Fugue 69.0025% 8 - C3 -1IA9 - TRPM7_MOUSE -
2 PsiBlast_PDB 68.9334% 16 - C3 -3LLA 4.7 MHCKA_DICDI
22 HHSearch 68.6127% -26 - C3 -4KUJ - ? -
21 HHSearch 68.0325% -1 - C3 -1IA9 - TRPM7_MOUSE -
5 PsiBlast_PDB 68.0336% 21 - C3 -5DYJ 4.6 MHCKA_DICDI
9 PsiBlast_PDB 67.5934% 11 - C3 -4ZS4 4.7 MHCKA_DICDI
28 Fugue 67.1529% 64 - C3 -3LKM - -
7 PsiBlast_PDB 66.6734% 9 - C3 -4ZMF - MHCKA_DICDI -
1 PsiBlast_PDB 66.6134% 17 - C3 -3LKM 4.8
10 PsiBlast_PDB 65.6436% 12 - C3 -3PDT 4.9
4 PsiBlast_PDB 65.0934% 14 - C3 -5E4H - MHCKA_DICDI -
12 PsiBlast_PDB 63.5628% -17 - C3 -4NL0 4.2 ?
11 PsiBlast_PDB 63.3528% -11 - C3 -4KUJ 2.8 ?
8 PsiBlast_PDB 62.5934% 14 - C3 -3LMI 4.7 MHCKA_DICDI
31 Fugue 45.0317% 17 - C3 -4NXT - MID51_HUMAN -