@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0347: (2017-12-20 )
MSIKWSLSDNIWLRRVAIDHQLLRKEKTNTQLMEKILLHNLNQTEFFINKAIGWILRDYSKTNPTWVTCFIDENKERMAELSIKEASKYL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_C_3(5CLB)
?
[Raw transfer]
-
NACID_B_2(5CLE)
?
[Raw transfer]
-
NACID_B_2(5CL9)
?
[Raw transfer]
-
NACID_B_2(5CLD)
?
[Raw transfer]
-
NACID_B_2(5CLA)
?
[Raw transfer]
-
NACID_B_2(5CL6)
?
[Raw transfer]
-
NACID_B_2(5CL3)
?
[Raw transfer]
-
NACID_B_2(5CL5)
?
[Raw transfer]
-
NACID_B_2(5KUB)
?
[Raw transfer]
-
NACID_B_2(5CL4)
?
[Raw transfer]
-
NACID_B_2(5CL8)
?
[Raw transfer]
-
NACID_B_2(5CL8)
?
[Raw transfer]
-
NACID_B_2(5CL7)
?
[Raw transfer]
-
NACID_C_3(3JXZ)
?
[Raw transfer]
-
NACID_C_3(3JX7)
?
[Raw transfer]
-
NACID_C_3(3JXY)
?
[Raw transfer]
-
NACID_C_3(3JX7)
?
[Raw transfer]
-
NACID_C_3(5CLC)
?
[Raw transfer]
-
NACID_C_3(5UUG)
?
[Raw transfer]
-
NACID_C_3(5UUF)
?
[Raw transfer]
-
NACID_B_2(3JY1)
?
[Raw transfer]
-
NACID_C_3(5UUH)
?
[Raw transfer]
-
17 PsiBlast_PDB 95.6747%-124 - C2 -3BVS - ? -
10 PsiBlast_PDB 95.4447%-122 - C2 -5KUB 3.9 ?
25 HHSearch 95.2647%-130 - C2 -5CL8 3.9 ?
9 PsiBlast_PDB 95.2647%-124 - C2 -5CLE 3.2 ?
3 PsiBlast_PDB 94.9347%-127 - C2 -5CL8 3.9 ?
8 PsiBlast_PDB 94.8747%-120 - C2 -5CLD 4.2 ?
5 PsiBlast_PDB 94.7847%-126 - C2 -5CLA 3.1 ?
22 PsiBlast_CBE 94.3947%-123 - C2 -5CL6 3.7 ?
23 PsiBlast_CBE 94.2347%-121 - C2 -5CL5 4.2 ?
24 PsiBlast_CBE 94.0447%-121 - C2 -5CL4 4.0 ?
4 PsiBlast_PDB 93.9847%-124 - C2 -5CL9 4.2 ?
15 PsiBlast_PDB 93.7947%-124 - C2 -3JXY 4.4 ?
11 PsiBlast_PDB 93.7047%-127 - C2 -5UUF 3.4 ?
21 PsiBlast_CBE 93.6347%-124 - C2 -5CL7 3.6 ?
16 PsiBlast_PDB 93.4147%-121 - C2 -5CL3 4.1 ?
14 PsiBlast_PDB 93.1847%-124 - C2 -3JX7 4.2 ?
12 PsiBlast_PDB 93.1047%-126 - C2 -5UUG 3.4 ?
26 HHSearch 92.8247%-129 - C2 -3JX7 4.2 ?
7 PsiBlast_PDB 92.5747%-121 - C2 -5CLC 3.4 ?
13 PsiBlast_PDB 92.4047%-122 - C2 -5UUH 3.4 ?
2 PsiBlast_PDB 92.1347%-127 - C2 -3JY1 3.6 ?
6 PsiBlast_PDB 91.6047%-121 - C2 -5CLB Error ?
18 PsiBlast_PDB 91.3647%-125 - C2 -3JXZ 3.6 ?